Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07478 ATGAAAGGTAGAAAAGAAGACTATGAAGATTTTGGTGTCTGTTTTCTCCGTTCCCCAATTTGTTGTGTGATAGGGCAGGCGTCCACCGGCAAAACCACACTTTTGGATTGTATTCGAGGTACTGATCCTGAATGTTGTCCTTACACCTATATGATTACCGCTACACATGTACCTTCTGAGATCATACTTGAAAGATCATATGGATTGATGAATCCTAAGATGATACTTGAAAGATCATATGGATTGATGAATTCTAAAGCAAAAATCAGAGTTCCTGGTTTACTGTTTCTTGATACCCCAGGACACACTTCCTATAATAAATTAATATCTAAGGGTTTAGCTCTATGTGATATTGCCGTCTTGGTTGTTAACACTGTGTTGGGATTAAACCCGCTTACTCATAATTCACTCGATCTTTTAAGCAAGTCCAACAAAAAGTTTATTCTTGTCGTGAATCAGGTTGACCGTCGATGGAAACCATGTGAGAATGCTACATTTGCTGCTGCATTTAAGCAGCAGTCTGTGATGGTTCAAAATGCTTTTAATACGAAGCTCGCTCAGATTATTACACAATTGAAACAATATTCAGAGCCATATGATTTGGCAGAACCACTCTGCATTGTGCCTACGTGTGCAAAAAGTGGTGAAGGAATCTCTGATATGTTATTACAATTGGTTATGCGGACTCAAAAACTCATGGTTGAGAAACTAACATACAGGGAGGGAGAGGAGGAGGAAGAATTGCTGCAGAGACCTAATTGCTATTTGTTTATGGGTTACCAGTGTACTGTTTTGTATGCTTACTTTATTGAAGGCCCTGTTGCCACTATCGACGTTGTTTTAGTTAATGGTACTCTTCACGAAGGAGATAAAATAATTGTATACGGAAAGAAGGTGAAAATTGTTACCTCAATTAAATCTTTATTGACACCTAGTCCACTAAGGGAAATTAATAATTCTAAGGGAAACTATGTCAGACACACTAAAATACAAGGTGGGAGGGCTATCAAGATCATTGCCAAGGGGCTTGAATATGCTATTGGCCACGATGATTTATATCTTTTGAGACCTCATGTTTCAAAAAATGTTGAAGAAAGAGCCTTGGTTTCCGTCTACTATAATTTTTGA 1128 0.3803 MKGRKEDYEDFGVCFLRSPICCVIGQASTGKTTLLDCIRGTDPECCPYTYMITATHVPSEIILERSYGLMNPKMILERSYGLMNSKAKIRVPGLLFLDTPGHTSYNKLISKGLALCDIAVLVVNTVLGLNPLTHNSLDLLSKSNKKFILVVNQVDRRWKPCENATFAAAFKQQSVMVQNAFNTKLAQIITQLKQYSEPYDLAEPLCIVPTCAKSGEGISDMLLQLVMRTQKLMVEKLTYREGEEEEELLQRPNCYLFMGYQCTVLYAYFIEGPVATIDVVLVNGTLHEGDKIIVYGKKVKIVTSIKSLLTPSPLREINNSKGNYVRHTKIQGGRAIKIIAKGLEYAIGHDDLYLLRPHVSKNVEERALVSVYYNF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07478 375 PRINTS GTP-binding elongation factor signature 147 156 IPR000795 GO:0003924|GO:0005525
Vivi2g07478 375 PRINTS GTP-binding elongation factor signature 20 33 IPR000795 GO:0003924|GO:0005525
Vivi2g07478 375 PRINTS GTP-binding elongation factor signature 95 105 IPR000795 GO:0003924|GO:0005525
Vivi2g07478 375 PRINTS GTP-binding elongation factor signature 111 122 IPR000795 GO:0003924|GO:0005525
Vivi2g07478 375 Gene3D - 15 240 IPR027417 -
Vivi2g07478 375 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 15 357 IPR015760 -
Vivi2g07478 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 311 IPR027417 -
Vivi2g07478 375 Pfam Elongation factor Tu GTP binding domain 20 226 IPR000795 GO:0003924|GO:0005525
Vivi2g07478 375 Gene3D Translation factors 259 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07478 Vivi-Chr2 219358074 219359790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07478 16 357 Eukaryotic Initiation Factors Gene Family AT1G76810 45.198 2.86e-85 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07478 K03243 - vvo:131651363 724.161