Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07470 ATGAATTCTAAACCCTACTTCTCCAACAACTTCAATGGTTATTATTTTGACCTAAATAGCCCTCCATTCTATAATTTCCCATCTAGTTTCCATCAAAACAACATATCTTTCTCATCTCCATCTCCACCAACTCCAAGAGAAGCTCTTCCTTTACTTAACCTAAACCTAAACCCTACAAAACATGAAGATCTTCTTGAATCTTCCTTCTCTTCCATGGAAATGATGAACATGAAAGAGAAAGAACAACTAAGTATATCATCAAACTCTTTAGATGATGTTGATGATGATGTTACTGTTGCTTTACATCTAGGGCTTCCAAGTATAGCTTCATCTGATTTGGCTTCTGAGAAAGAAGATGATGATGAAAAAGTTGTAACTGTTGCTTCTGAGTGTCCACCAAGTAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTTATTGGCCCTACACAGTTTTCATGTCCTCTTTGTTTCAAAACCTTCAACAGATACAATAACATGCAGATGCACATGTGGGGACATGGATCACAATATAGAAAAGGACCAGAATCTCTTCGAGGAACACAACCAACAGCAATGTTAAGACTCCCATGTTATTGTTGTGCCTCAGATTGCAAGAACAACATAGACCATCCAAGAGCAAAGCCACTAAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAACCCTTCATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTGAGAGGAGATTGGAGAACTCATGAGAAAAACTGTGGCAAGCTTTGGTATTGTTGTTGTGGGTCAGATTTTAAACACAAAAGGTCACTTAAAGATCATATAAAAGCATTTGGAAATGGACATAAAGCTTATGGGATTGATGATCAAGATGGGTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG 942 0.3726 MNSKPYFSNNFNGYYFDLNSPPFYNFPSSFHQNNISFSSPSPPTPREALPLLNLNLNPTKHEDLLESSFSSMEMMNMKEKEQLSISSNSLDDVDDDVTVALHLGLPSIASSDLASEKEDDDEKVVTVASECPPSKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCASDCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDDQDGSEIEQENESFQS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07470 313 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Vivi2g07470 313 PANTHER ZINC FINGER PROTEIN WIP2 30 307 IPR043584 GO:0003700|GO:0010468
Vivi2g07470 313 SUPERFAMILY beta-beta-alpha zinc fingers 222 260 IPR036236 -
Vivi2g07470 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Vivi2g07470 313 FunFam Zinc finger protein WIP2 209 291 - -
Vivi2g07470 313 Gene3D Classic Zinc Finger 155 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07470 Vivi-Chr2 219196456 219199283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07470 97 313 C2H2 Transcription Factor Family AT3G57670 68.966 2.47e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g07470 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07470 - - qsa:O6P43_000130 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07470 2 219196456 219199283 Vivi2g07470 2 219196456 219199283 ECH
Vivi6g04512 6 146747706 146749225 Vivi2g07470 2 219196456 219199283 ECH