Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07456 ATGAGAAAGCCAGAGATTTATAATACGAAAAAGAGCGATGTTATTAAGAAGAAGCTTAGGAAAGGGTTGTGGTCACCAGAAGAAGATGAGAAGCTTATGAACTATATGGTAAGGAGTAATGGACAAGGTTGTTGGAGTGATGTAGCAAGAAATGCTGGATTGGAAAGGTGTGGCAAAAGTTGTAGATTGAGATGGATTAATTACTTGAGACCTGATCTTAAAAGAGGTGCTTTTTCGAATCAAGAAGAAGAACTCATCGTTCATCTGCATTCCCTTCTCGGAAACAGATGGTCACAAATAGCAGCGCGTTTACCTGGGAGAACAGACAACGAAATCAAAAACTTTTGGAACTCAACCATAAAGAAAAGACTCAAGAACATATCTTCAAACACAACATCACCAAATGCAAGTGACGAATCTTCCTCGCCCGAGTCTAACAAAGAGATCAATATACTAGGGTTTGCATCACAGCATCAGCAACATGCAAATTACAACAACTACATGATGAATGTGCCTACATTCACTTCATCATCTTCTTCGCCATCGATATTCGAAAACACGATTTTCAATACTATGAATATTGACACATTGCCTATGCTGCAGCATAGTGGATACTTAAACACTGCATTTACAGTGCCATGCTTTTCACAACAAAGTCATGAAGTTGATATTAAAGATTCTTGTTTTGAAAATGGTGGAGTGCAAGGGGATGTGTGCAAGAGAGAGGACATCAGTATTGATTATACTTTTGATGACATGAACAGTATTCTTAGTACCTGCAATATTATTGACAGCAATAATGATCATAAAAGTGGGGTAGTGGAGAATTTATTTCAAGAACAAATGAACTTGGGAGAGTGGGATTTTGAGGAGTTGATGAAAGATGTTTCTTCTTTTTCTTTTCTTGATTATTCATTCTGA 921 0.3724 MRKPEIYNTKKSDVIKKKLRKGLWSPEEDEKLMNYMVRSNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSNQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNISSNTTSPNASDESSSPESNKEINILGFASQHQQHANYNNYMMNVPTFTSSSSSPSIFENTIFNTMNIDTLPMLQHSGYLNTAFTVPCFSQQSHEVDIKDSCFENGGVQGDVCKREDISIDYTFDDMNSILSTCNIIDSNNDHKSGVVENLFQEQMNLGEWDFEELMKDVSSFSFLDYSF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07456 306 SMART sant 74 122 IPR001005 -
Vivi2g07456 306 SMART sant 20 71 IPR001005 -
Vivi2g07456 306 Gene3D - 18 75 - -
Vivi2g07456 306 CDD SANT 24 69 IPR001005 -
Vivi2g07456 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
Vivi2g07456 306 PANTHER MYB DOMAIN PROTEIN 55 15 254 - -
Vivi2g07456 306 FunFam Transcription factor MYB46 76 147 - -
Vivi2g07456 306 Pfam Myb-like DNA-binding domain 21 69 IPR001005 -
Vivi2g07456 306 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Vivi2g07456 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vivi2g07456 306 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vivi2g07456 306 FunFam MYB transcription factor 18 75 - -
Vivi2g07456 306 MobiDBLite consensus disorder prediction 127 146 - -
Vivi2g07456 306 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vivi2g07456 306 CDD SANT 77 117 IPR001005 -
Vivi2g07456 306 Gene3D - 76 150 - -
Vivi2g07456 306 ProSiteProfiles Myb-like domain profile. 16 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07456 Vivi-Chr2 219022543 219023727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07456 1 128 MYB Transcription Factor Family AT5G12870 78.906 1.18e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g07456 Myb_DNA-binding 1.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07456 K09422 - gmx:100785810 347.051