Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07429 ATGAACTCGGACACGCTTCCCTCCTCCACGGCGTCGTTTTGGTGCTATAGCTGCACGCGTTTCGTTCACCTTTTGGATCACAATGACGTCGTTTGTCCCCACTGCACAAGCGGTTTTGTGGAAGAGATTCACGCCGGTAACTCTCCGGCTGTTTCCTTGTTCGCAGACGGAATCCATTCTTCCAGGAGACAAACCTCCCGCCGGAGACGTCGTAACGCTGGCAACAGATCGCCTTTCAATCCTGTAATCGTGCTTCGCGGACCTAGAGAGGACAACGGCGGTAGCGGCGGCGGTGAAAGTGAGGGGAGTAGCTTTGAATTGTATTATGAAGACGGCAATGGCGCCGATCTACGTCCGCTTCCGCCTAATATGTCGGAGTTATTGCTTGGTTCCGGCTTCGATCGATTGCTCGAGCAATTCTCTCAGATCGAAATCAACGGTTTCGGTAGGGCGGAGAATCCACCGGCGTCAAAGGCGGCGATAGAGTCAATACCAACGGTGGACATCACCGACGCAGAGGTGGAAGAAGAAACGCACTGTGCGGTTTGCAAAGAAGCATTCGAGCTTGGTTCAGAGGCGCGTAAGATGCCGTGCAAGCATCTTTACCATTCCGATTGCATTCTCCCATGGCTTTCGATGCGAAACTCGTGCCCGGTCTGCCGCCACGAGTTACCTTCCGATCAAAACCTAAACCAAAACCCCTCGGAGAGTAGATTATCTGGCCAGACCGATGAAGAAGCGGTTGGATTGACGATATGGAGATTACCAGGAGGTGGATTCGCCGTCGGGAGATTCACCGGTGGTCGGAGAGCCGGTGAGATTCAGTTACCGGTTGTTTACACTGAGATGGACGGCGGTAATAACTCAAACGAAGATTCTAGAAGCGTCTCTTTGGCAGTAGGAAGCAATAGAGTTAGAGAGAGACGTGGAATTCGCAGAATTTTTCGTAATTTTTTATCGTTTTTTGGTTCCGTTAATTTAAACCGTAGCCGTAGCGTTTCTGGTTCTGGTTCTGGTTCATTTTTTAGTAGAAGTTCACGGAGAAGAAGCAGAACTTGGGTAACGGAATAA 1071 0.5061 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCTSGFVEEIHAGNSPAVSLFADGIHSSRRQTSRRRRRNAGNRSPFNPVIVLRGPREDNGGSGGGESEGSSFELYYEDGNGADLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVDITDAEVEEETHCAVCKEAFELGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNLNQNPSESRLSGQTDEEAVGLTIWRLPGGGFAVGRFTGGRRAGEIQLPVVYTEMDGGNNSNEDSRSVSLAVGSNRVRERRGIRRIFRNFLSFFGSVNLNRSRSVSGSGSGSFFSRSSRRRSRTWVTE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07429 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 227 IPR013083 -
Vivi2g07429 356 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Vivi2g07429 356 MobiDBLite consensus disorder prediction 60 105 - -
Vivi2g07429 356 FunFam E3 ubiquitin-protein ligase RING1-like 142 227 - -
Vivi2g07429 356 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Vivi2g07429 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 225 - -
Vivi2g07429 356 SMART ring_2 180 220 IPR001841 -
Vivi2g07429 356 SUPERFAMILY RING/U-box 160 230 - -
Vivi2g07429 356 CDD RING-H2_RNF126-like 180 221 - -
Vivi2g07429 356 Pfam Protein of unknown function (DUF1117) 248 351 IPR010543 -
Vivi2g07429 356 Pfam Ring finger domain 179 221 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07429 Vivi-Chr2 218644043 218646034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07429 116 229 C3H Transcription Factor Family AT5G01980 44.737 2.38e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07429 K11982 - gmx:100804867 404.831