Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07402 ATGGAGTACCCTTTTTATCCTAAGGGGAGAGGATTTGGGTATTGGCAGTCTCCGGGAACTGAGTTGGAAGGTTTAACATCATTAGATGGTGGAATAGGTAATTTGGCGTCAGAGGATATGCCTAGCAGCTTCTCCGAGCTCATGAACTTTGATAATTATGCTGGTTTGTATTCTGGTCCATCCATGACTGATCAAATTATGGCTAACGAGATTCCGTCTCTTGCCTCGGTGTTATATCAGTCACCGGATGGATTCAGTCCAGTTGAACAGAATTGCGGGCAATTCTATATGACAGGAGTTAGTGGAAATTACAATAATTCGGATGGCTCACCTGTTTTTGCGGAGAGAGTTGTGCGTCAGAAAATGGACACCCTACGTGGTTTCTTAGATAACAACAACAATGATGCAAATAACTTAAGTTCTAAGCAAAAAATCGATGATTCTATGCAGCATGTTAATACTTTATCTCTTGATGAAAAAATGCTGAAAGCCTTGTCGTTTTTTAAAGAATCAGCTGGTGGGGGAATATTGGCGCAAGTTTGGGTACCGATAAAACATGATGGTCAAATCTTTTTAAGCACGAGTGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGAGAAGTGTCAAGGACATTTATATTTTCCACAGAAGGAAAACCAGGCTGTTTACCGGGACTTCCCGGTCGTGTTTTTATCTCTAAAGTTCCTGAATGGACTTCCAATGTTGGTTATTACAATCCAAGTGAGTACTTGAGGGTTGAGCAGGCAAGAAGTCACGATGTTCGTGGATCAATTGCTTTTCCCATATTTGATCTGCAATCTGGACTGCCATGTTGTGCTGTTTTGGAACTTGTCACTACGAAGGAAAAGCTTGATTTTGACAGAGAATTGGAAATTATTTGTCGTTCACTTCAGCTTGTAAATTTAAGGACTACTATGCCTATTCGGCTGCTTCCCGAGTGTCTTTCGACCAATAAAAGAGCTGCTCTAACAGAGATAATTGATGTGTTACGATCTGTTTGTCATGCACATAGATTGCCAATGGCACTAACATGGATTCCCTGTTTTCACACTGATGGCACAAGAGAACAAACTACTAGAATACAAATTAAAGAGGGTAATTCAAGTTCTAAAGAGAAAAGCATACTGTGTATCGAAGAGTCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTGCGTGCATGCATTGAACATCCTCTCGAGGAAGGGAAAGGTGTAGCTGGGAAAGCTCTTCAATCACATCACCCTTACTTCTATTCTGACGTGAAAACATATGATATTAGTGAGTATCCGCTTGTTCATCATGCACGTAAATTCAATTTGAATGCTGCAGTTGCAATCAGGCTAAGGAGTATTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTATCAATATGAAAGGAAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCGGGTACCATGCAGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGCTGAACTATCAGGAATAGAATGTAAACACGCGGGGTTTCGGAAAAAAAAAGTCCTGAATTTTCCCCCCTCATCCATGAGAAATTCTCAGATGCCATTAATAAATGAAAACCATAGCTCTGTCCAGAAGCTGTTGTCGGAGTCTTCAGACCTGAGGAACAATGGAAAAGAGCCTTCTTGTAACCAGGAAAAAAATGGATCGAGAAAGCGAGGCGAGAAAAGTAGAAGCACATCAGAGAAGAAAGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAACCGTTCTTTGAAGAAAATTCAGACCGTGCTTGACTCTGTTCAGGGAGTTGAAGGCGGGTTAAAGTTTGATCCTACCATGGGAGCATTTGTGGCAGGAGGGACAACCATCCAAGAAATTGATGAAAGTAAAAATCTCCTTTTCCCGGAGAAAAGTACTACACAAGACTCTGAGCCTATTTCAGAAGATGCTGCCTCGGTGCCTCTGGCACCTTGTAGTGAAAGTGAAAATTCGGCAAATAAGTTGGATAGAAAATTGAAGGGAACCAACGCATCTATGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGCATGATTTTCCTGAACAAGCTTGTTTTAGTTCTGTTGTTGCAAAAGGTAATGCTATTGGCCAGAGAAGCTCCTTTGTTGCTGATGACATGGACAGTGACGCGGATGGGGATGATGAGGTTGTTGAACGCAACAATCCTACTTCTTCAAGCTTGACAGACTCATCTAGTGGCTCGGGTTCAATCATGCATGAGAGTTCATCTAGTTACCAGAACTTTGAGAACCAGAAGCAGTCCAAAGCCAAATCAACCATTGTTGATAGCGGGACAAAAATCACCGTGAAAGCTACATACGGAGAAGACACCATTCGTTTCAAATTTGATCCATCCACAGGTTGTTTTAAACTATACGAAGAAGTTGCAACAAGATTCAAACTGCAATACGGGACATTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCGGATTTGCAAGAGTGTTTAGAAATATTGGATGATATGGGGACACGGAATGCAAGGTTTCTTGTTCGTGATATGCCTTGCATTTTAGGCAGCTCCGGCAGTAACAGTTGCTACTTGGGAGGCAGCTCATAG 2805 0.4118 MEYPFYPKGRGFGYWQSPGTELEGLTSLDGGIGNLASEDMPSSFSELMNFDNYAGLYSGPSMTDQIMANEIPSLASVLYQSPDGFSPVEQNCGQFYMTGVSGNYNNSDGSPVFAERVVRQKMDTLRGFLDNNNNDANNLSSKQKIDDSMQHVNTLSLDEKMLKALSFFKESAGGGILAQVWVPIKHDGQIFLSTSEQPYLLDQMLAGYREVSRTFIFSTEGKPGCLPGLPGRVFISKVPEWTSNVGYYNPSEYLRVEQARSHDVRGSIAFPIFDLQSGLPCCAVLELVTTKEKLDFDRELEIICRSLQLVNLRTTMPIRLLPECLSTNKRAALTEIIDVLRSVCHAHRLPMALTWIPCFHTDGTREQTTRIQIKEGNSSSKEKSILCIEESACYITDRVMEGFVRACIEHPLEEGKGVAGKALQSHHPYFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSIYTNDDDYILEFFLPINMKGSSEQQLLLDNLSGTMQRICKSLRTVSGAELSGIECKHAGFRKKKVLNFPPSSMRNSQMPLINENHSSVQKLLSESSDLRNNGKEPSCNQEKNGSRKRGEKSRSTSEKKVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPTMGAFVAGGTTIQEIDESKNLLFPEKSTTQDSEPISEDAASVPLAPCSESENSANKLDRKLKGTNASMIDCSEDSKSFAMHDFPEQACFSSVVAKGNAIGQRSSFVADDMDSDADGDDEVVERNNPTSSSLTDSSSGSGSIMHESSSSYQNFENQKQSKAKSTIVDSGTKITVKATYGEDTIRFKFDPSTGCFKLYEEVATRFKLQYGTFQLKYLDDEEEWVMLVNDSDLQECLEILDDMGTRNARFLVRDMPCILGSSGSNSCYLGGSS 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07402 934 MobiDBLite consensus disorder prediction 771 818 - -
Vivi2g07402 934 SUPERFAMILY CAD & PB1 domains 827 918 - -
Vivi2g07402 934 Pfam RWP-RK domain 592 639 IPR003035 -
Vivi2g07402 934 MobiDBLite consensus disorder prediction 691 723 - -
Vivi2g07402 934 Pfam PB1 domain 835 914 IPR000270 GO:0005515
Vivi2g07402 934 ProSiteProfiles PB1 domain profile. 834 916 IPR000270 GO:0005515
Vivi2g07402 934 MobiDBLite consensus disorder prediction 572 589 - -
Vivi2g07402 934 Gene3D - 830 915 - -
Vivi2g07402 934 MobiDBLite consensus disorder prediction 554 590 - -
Vivi2g07402 934 MobiDBLite consensus disorder prediction 787 818 - -
Vivi2g07402 934 ProSiteProfiles RWP-RK domain profile. 573 659 IPR003035 -
Vivi2g07402 934 MobiDBLite consensus disorder prediction 554 571 - -
Vivi2g07402 934 CDD PB1_NLP 835 915 IPR034891 -
Vivi2g07402 934 SMART PB1_new 834 916 IPR000270 GO:0005515
Vivi2g07402 934 PANTHER PROTEIN NLP8 131 926 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07402 Vivi-Chr2 218242031 218249130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07402 1 931 NLP Transcription Factor Family AT2G43500 48.901 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi2g07402 PB1 7.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07402 - - gmx:100804426 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07402 2 218242031 218249130 Vivi2g07402 2 218242031 218249130 ECH
Vivi2g07402 2 218242031 218249130 Vivi5g02797 5 114686808 114690436 PCT