Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07389 ATGAAGTGTTTATGCGAGAAAGACTCTGGTCTATGTTCTGTTCATTCAAATTCACACCGTGTTTTCGGATGCCCGTCATGGGGAACTTCTTCTGAACCCGAAGTCCAACAAGCATCCATGTCCAAAAGTTTGAGCTTCAAAATGGATGCTCTGCCACAAAAATGTCCTGACAAGAGTAAGGCACTGAGTTTTCAATTACATGAACTGGATTCATCTTCAACTCAATCGACTGACTCATCACAATCAGGTCAAATTCCTTTCCAGCATAGTTCTTCTACTGGTTCAACATTTAAGGGAACCGAGGGGAACGATATGGGGTGTCTCATCGGCTCATCATCTATTGGGAGTCCAAATCTCACCATCCATCCTCCATTAGTGGATCCCAGCCAATCACTTGCGCATATTGCATTCCCCTTTGCTGATCCATTCTATAGTGGCCTACTTTCTGCTTCATATGGCCATCAATATAAGCTAATGGAAACAGCTGCTGTCCGAGTTCCCCTGCCGTCTGACATGATGGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCCATTCTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACACAACAAACTCATCAAGGATCGTAAACCATATCTTCATGAGTCACGTCATGTACATGCATTGAAGAGAGCTAGAGGTGCCGGTGGCCGCTTCCTCAATGCTAAAAAGCTCGAAGAGTCAAAGCTTGCATCACAAAACCAAAACCATAGCCAAAATGTTTCCACCAGCTATAATTGTTTGAATTTGAATGCGAATATGCCAGAGTCTAAAATGCATGATCAGGTTGAAAACTATAAAGATGATGCTTCTACATATGGATCTAATAGGAATGAAATGTTCCAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAAACTGGAAGGAACATGCAGGATTATACAACGGACAAGAATGTTGGTGCGAATCAACGCCACCGACTATCGGTTCTCATGTGA 1008 0.4315 MKCLCEKDSGLCSVHSNSHRVFGCPSWGTSSEPEVQQASMSKSLSFKMDALPQKCPDKSKALSFQLHELDSSSTQSTDSSQSGQIPFQHSSSTGSTFKGTEGNDMGCLIGSSSIGSPNLTIHPPLVDPSQSLAHIAFPFADPFYSGLLSASYGHQYKLMETAAVRVPLPSDMMEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLEESKLASQNQNHSQNVSTSYNCLNLNANMPESKMHDQVENYKDDASTYGSNRNEMFQQQQELEFRLCSYPSSQTGRNMQDYTTDKNVGANQRHRLSVLM 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07389 335 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Vivi2g07389 335 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Vivi2g07389 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 175 230 IPR001289 GO:0003700|GO:0006355
Vivi2g07389 335 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Vivi2g07389 335 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Vivi2g07389 335 MobiDBLite consensus disorder prediction 70 96 - -
Vivi2g07389 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 297 IPR001289 GO:0003700|GO:0006355
Vivi2g07389 335 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Vivi2g07389 335 Gene3D - 173 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07389 Vivi-Chr2 218149021 218152465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07389 26 245 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.156 5.44e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vivi2g07389 CBFB_NFYA 7.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07389 K08064 - gmx:100500765 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07389 2 218149021 218152465 Vivi2g07389 2 218149021 218152465 ECH
Vivi2g07389 2 218149021 218152465 Vivi7g03966 7 105599068 105601246 PCT