Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07379 ATGGAAGGTCGAGGTCGTTCCGTGGAAGATATTTTCGAGGATTTCAAAAGCCGGAGAGCTGGAATCATCAAAGCGCTTACCGTTGATGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAAGAGAATTTGTGTTTATATGGATTGCTTAATGAGAAGTGGGAAGTGAATTTACCTGTTGAGGAAGTTCCTCCAGAGCTTCCTGAGCCTGTACTGGGTATCAACTTTGCTAGGGATGGCATGCAAGAGAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTTCCCTTGCATTCTACTTTGGAGCTAGATTTGCGTTTGACAGAACTGACAGGAAGCGACTATTCAATATGATTAATGAACTACCAACAATATTTGAAATTGTTAATGGCTCAACAAAGAAACCAGTTAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCGGCAAATCTAAGTCCAGTTCTAAAGTGCGGGCTCCTGAAACTCAGAGCAGACTACCAAAGGCATTGCAACCAAAAGAAGAGGAGGAAGGACTGGAAGAGAATGATGATGATGAACATGGAGAAGCCATGTGTGGGGCTTGTGGTGATAACGATGGCACTGATGAGTTCTGGATTTGCTGCGACATTTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCTCGGGCCGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAGTAACAAGAGAGCTCGCTAG 750 0.436 MEGRGRSVEDIFEDFKSRRAGIIKALTVDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFAFDRTDRKRLFNMINELPTIFEIVNGSTKKPVKEKSSVSNNSGGKSKSSSKVRAPETQSRLPKALQPKEEEEGLEENDDDEHGEAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07379 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Vivi2g07379 249 PANTHER CPG BINDING PROTEIN 6 248 IPR045104 GO:0006355|GO:0042393
Vivi2g07379 249 MobiDBLite consensus disorder prediction 141 190 - -
Vivi2g07379 249 FunFam PHD finger alfin-like protein 188 244 - -
Vivi2g07379 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Vivi2g07379 249 CDD PHD_AL_plant 196 245 IPR044104 -
Vivi2g07379 249 MobiDBLite consensus disorder prediction 141 165 - -
Vivi2g07379 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
Vivi2g07379 249 SMART PHD_3 195 243 IPR001965 -
Vivi2g07379 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Vivi2g07379 249 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Vivi2g07379 249 Pfam PHD-finger 195 244 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07379 Vivi-Chr2 218086439 218090909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07379 6 249 Alfin-like Transcription Factor Family AT3G42790 72.541 3.07e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vivi2g07379 Alfin 1.1e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07379 K26274 - gmx:100170696 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03965 7 105575005 105578903 Vivi2g07379 2 218086439 218090909 ECH
Vivi2g07379 2 218086439 218090909 Vivi2g07379 2 218086439 218090909 ECH
Vivi2g07379 2 218086439 218090909 Vivi7g03965 7 105575005 105578903 PCT