Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07372 ATGGGAAATCAGAAGCAAAAGTGGACACCTGAAGAAGAAGAAGCCTTACATCAAGGCGTTCAAAAACACGGTACCGGAAAGTGGAAGAACATTCTCAGAGATAAAGAGTTCGCTGAGAAACTCTGTAGCCGTTCCAACATTGATCTCAAGGATAAATGGCGGAATTTAAGTGTTTTTCCTGGTCAAAACTCTAAAGATAAGTCTAGAACTCCCAAGTCGAAATCGTTGGTTATTGCTTCTGCTTCTCCTGCTACTCCGGCTTCTCCTGCTCCGCTTAATGTTATTATGCAAAATGTTACTCCTGTGCCTCAAATTCAGACTCCTACAAGCCAGCCTTCTCAAATTGAAGATGCTCCTCCACAGTACAATTCAATGATTTTTGAAGCTTTATCAACAATCAAAGATGCCAACGGGTCTGACTTAAGTGCTATTGTTAGCTTCATTGAGCAAAAGCACAACCTTCCTCAAAATCAAAATTTCAGAAGGACACTAGGTTCAAAGCTAAGAAGGCTTGTTACTCAAGGGAGGCTCGAAAAGGTACAAAACAGTTACAAGATTAAGGATACCTCAGCGGAGACAAAGCCGGATGTTGACTCAAAACCACCTGCACCAAAAGAAATGAATTCACCAGCTCCAGCGGCATCTAATACTTCGGCATTTGATAATGCAATGAGGGAAGCTTCCGAAATTGTAGCGTTCAGAATTGCTGATGCAGAGAATAAGTCATTTTTGGCTGCTGAGGCAGTGAAGGAGACAGAAAGATATGCAAAGTTTGTCGAGGAAAATGATGCAATGTTAAAGTTTGCTGAAGAGCTTTTAGAAAAATGCAAGCTTGGTGGAAGTTTTCGCTTCGCTTAA 858 0.4138 MGNQKQKWTPEEEEALHQGVQKHGTGKWKNILRDKEFAEKLCSRSNIDLKDKWRNLSVFPGQNSKDKSRTPKSKSLVIASASPATPASPAPLNVIMQNVTPVPQIQTPTSQPSQIEDAPPQYNSMIFEALSTIKDANGSDLSAIVSFIEQKHNLPQNQNFRRTLGSKLRRLVTQGRLEKVQNSYKIKDTSAETKPDVDSKPPAPKEMNSPAPAASNTSAFDNAMREASEIVAFRIADAENKSFLAAEAVKETERYAKFVEENDAMLKFAEELLEKCKLGGSFRFA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07372 285 Gene3D - 116 198 IPR036388 -
Vivi2g07372 285 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vivi2g07372 285 MobiDBLite consensus disorder prediction 182 201 - -
Vivi2g07372 285 MobiDBLite consensus disorder prediction 1 27 - -
Vivi2g07372 285 Gene3D - 8 82 - -
Vivi2g07372 285 FunFam Telomere repeat-binding factor 1 2 58 - -
Vivi2g07372 285 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Vivi2g07372 285 SMART h15plus2 108 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi2g07372 285 Pfam linker histone H1 and H5 family 120 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi2g07372 285 SUPERFAMILY "Winged helix" DNA-binding domain 119 196 IPR036390 -
Vivi2g07372 285 PANTHER SINGLE MYB HISTONE 4 1 279 IPR044597 GO:0003691
Vivi2g07372 285 SMART sant 4 59 IPR001005 -
Vivi2g07372 285 MobiDBLite consensus disorder prediction 57 90 - -
Vivi2g07372 285 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi2g07372 285 MobiDBLite consensus disorder prediction 182 217 - -
Vivi2g07372 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Vivi2g07372 285 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vivi2g07372 285 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07372 Vivi-Chr2 217978335 217984289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07372 1 285 Single Myb Histone (SMH) Gene Family AT1G72740 45.486 2.00e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi2g07372 Linker_histone 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07372 K09422 - gmx:778177 272.707