Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07343 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCTACTGCTACCGCTGCTGCAACCAATTATCCTCAACAATACTTTTCTCCATCACAATCTCAAACTCATGACGAGACTCCGGTGAAGAAAAGGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTTATAGCGTTATCGCCGAAGACGCTTATGGCGACGAATAGATTCATATGTGAGATCTGCAACAAAGGATTTCAAAGAGATCAGAATCTTCAACTTCATAAAAGAGGACATAATTTACCATGGAAGTTGAAGCAGAGAACAGGCAATGAGATAATAAGGAAGAAAGTATATGTATGTCCAGAACCAACTTGTGTGCACCATGAGCCATCAAGAGCCTTGGGAGATTTAACTGGTATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGTACAAGAGAATATAGATGTGACTGTGGAACCCTCTTCACAAGGAGGGACAGTTTCATAACTCATAGAGCATTCTGTGATGCATTAGCAGAAGAGAGTTCAAGAACTGTAACTCATCAACCAAGCTCTCACAACATCATCAATCTCCAAACTCATGAGACACAAGGTTTCACATTAAAGAAAGAGCATCAAAATTTCAGTTTTCTAAAGCAAGAAATTCAAATACCATCATGGCTTGAATTAGAACAAGATCTAAACCTTCATGAAAACCCTAACCCTAGAAACGGTCCTACTACACTTCCATCATACCAACCAACATCTGCAGTTTCACCTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACAACCAGCTCATCACAACAACAATCCATGATCATGATAAGTGGGACCCGCCAACAAGGTCACGTGTCTCTTGATGACTCTTCCACCAACAACAACATGTTAAACTCAAATAGTAATTTTGGTTTGAATTTGTCCTCATGTGAAGACCAAATGATGAACAACTCTTTCTCTTCTTCTGGCTTTCATGGAACAACAACCACCATTGATGACCGCGGCGGCACGGTTACCGTCACCGGAGGAAATGATGCATTTACAAGAGATTTCTTAGGTCTAAGGCCTTTATCTGATAGTGATATTCTGAGTATTGCTGGTATGGGAAACTGCATGGACTCTTCAAATTCCCATAATCAACAAAACGAAACTCAAAAACAATGGCAAGGTAATTAG 1269 0.409 MSNLTSASGEATATAAATNYPQQYFSPSQSQTHDETPVKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTGNEIIRKKVYVCPEPTCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFTRRDSFITHRAFCDALAEESSRTVTHQPSSHNIINLQTHETQGFTLKKEHQNFSFLKQEIQIPSWLELEQDLNLHENPNPRNGPTTLPSYQPTSAVSPHMSATALLQKAAQMGSTTSSSQQQSMIMISGTRQQGHVSLDDSSTNNNMLNSNSNFGLNLSSCEDQMMNNSFSSSGFHGTTTTIDDRGGTVTVTGGNDAFTRDFLGLRPLSDSDILSIAGMGNCMDSSNSHNQQNETQKQWQGN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07343 422 MobiDBLite consensus disorder prediction 255 279 - -
Vivi2g07343 422 Gene3D Classic Zinc Finger 102 194 - -
Vivi2g07343 422 MobiDBLite consensus disorder prediction 1 52 - -
Vivi2g07343 422 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vivi2g07343 422 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Vivi2g07343 422 Gene3D Classic Zinc Finger 64 91 - -
Vivi2g07343 422 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Vivi2g07343 422 SMART c2h2final6 145 165 IPR013087 -
Vivi2g07343 422 SMART c2h2final6 68 90 IPR013087 -
Vivi2g07343 422 SMART c2h2final6 110 140 IPR013087 -
Vivi2g07343 422 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Vivi2g07343 422 MobiDBLite consensus disorder prediction 1 33 - -
Vivi2g07343 422 MobiDBLite consensus disorder prediction 254 279 - -
Vivi2g07343 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vivi2g07343 422 FunFam protein indeterminate-domain 12-like 47 116 - -
Vivi2g07343 422 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 405 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07343 Vivi-Chr2 217342508 217344903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07343 1 406 IDZ Gene Family AT1G55110 50.336 1.73e-129 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g07343 zf-C2H2_jaz 4.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07343 K25870 - lja:Lj3g3v0323160.3 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07343 2 217342508 217344903 Vivi7g03675 7 102659682 102662503 PCT