Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07339 ATGAACATCAACATTTCAAGAAACAACAACAGCAACGGAGGAACCCCACAGGCTTGTTCTGCTTGTAAATACCAACGTAGGAAGTGCGGTCCAACCTGTATTCTCGCACCATATTTTCCTCACGAGCGTCAAAAACAGTTCCTCAACGCCCATAAATTATTCGGCGTTGGTAAAATCACCAACATGCTTAAGAATGTTCCTCCTGAATCCAGAGATGTAACCATGTCTACTATTGTTTATCAAGCTGATATGCGTGCTTTGGATCCTGTTGGTGGTTGTTATCGACATATTCAGACTCTGCAGGCTCAGATTGATTATTTCACTGTTGAGCTTCATTTTGTTCTTCAACAGCTTGCTATTTGTAGAGCCGCAGCTGCTTCTTCTTCATCCAATCATCATCATTATAATGATATCGTCGTAAATGGTAACGTTAATGGTATCGGTAACGACGATAATAATAATAATATTAATCATAATGATGATGAAGGTGTTATTATCCCTCCTCATCATTATCAACATCAACAGAATTTTGTTGAGGAACAACTGGATGATGTTAATATGTTTCAACCGCAACAGCAACAGCAGATGCAACCGCAGTATGTTGTTGATGATGTTGTCGGGGTTAACCCTAATTATGTTCCTTTGCAAGAGGATCTTAATACGTGGGTGAATTCAATACCGTTGTCGCCGTTAACGTTGCAGGATAATAAAAAGGAGGAGGATGAGGTGGATCAAGAACCTGTTGGTGATAATCGTTTGAATGATGATCAGAAACCTGTTTTTGACCTAAGTAATGAGATGAATTCGTCGGATATCGTCAGAGGTAGTACTAATGATCCGAGACAGCAGCTATGA 855 0.3988 MNINISRNNNSNGGTPQACSACKYQRRKCGPTCILAPYFPHERQKQFLNAHKLFGVGKITNMLKNVPPESRDVTMSTIVYQADMRALDPVGGCYRHIQTLQAQIDYFTVELHFVLQQLAICRAAAASSSSNHHHYNDIVVNGNVNGIGNDDNNNNINHNDDEGVIIPPHHYQHQQNFVEEQLDDVNMFQPQQQQQMQPQYVVDDVVGVNPNYVPLQEDLNTWVNSIPLSPLTLQDNKKEEDEVDQEPVGDNRLNDDQKPVFDLSNEMNSSDIVRGSTNDPRQQL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07339 284 Pfam Lateral organ boundaries (LOB) domain 18 113 IPR004883 -
Vivi2g07339 284 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 172 - -
Vivi2g07339 284 MobiDBLite consensus disorder prediction 261 284 - -
Vivi2g07339 284 MobiDBLite consensus disorder prediction 233 284 - -
Vivi2g07339 284 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
Vivi2g07339 284 MobiDBLite consensus disorder prediction 234 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07339 Vivi-Chr2 217273660 217275231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07339 17 134 AS2 family AT3G13850 59.322 3.28e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g07339 LOB 7.3e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07339 2 217273660 217275231 Vivi7g03680 7 102717919 102719084 PCT