Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07315 ATGAGCCGCTACGATAGCCGTTCCTCCGACCCCACTTCCTACCGCGACCGGAGAAGTGACTCGGGTTTAGGTGGCGGAGGAGGTTCTGTTGCTGCGCCTTCAAGTAGAAGAGACTACGATGACGGTGGGTCTGGTTCTCCTAAGAAGATTAATTTGGATGGGTTACCTCATTTTGAGAAAAATTTCTACAATGAGTCGCCTTCTGTGAGGGCAATGACTGAGGCTGAAGTTATTGAGTATCGGCGGAGACGCGAAATTACTGTTGAAGGGAAAGATGTTCCTAAACCTGTTAAATCCTTTTCTGATGCTGCTTTTCCAGAATATGTACTGGAAGAAGTTAAAAAAGCTGGATTTGTTGAACCTACACCTATTCAGTCCCAAGGTTGGCCAATGGCTTTGAAGGGACGTGATCTAATAGGAATTGCAGAGACAGGATCAGGGAAGACACTTGCTTATTTGTTGCCGGCAATAGTGCATGTAAATGCTCAGCCAATTCTAGATCCGGGGGATGGACCTATTGTGTTAGTTTTGGCTCCTACTCGTGAACTTGCCGTTCAAATACAACAAGAAGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGCACATGCATTTACGGTGGGGTTCCTAAGGGGCCTCAAGTGCGCGATCTACAGAAAGGTGTTGAAATTATAATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGAGAAGGGTCACATACCTGGTATTGGATGAAGCTGATAGGATGCTGGACATGGGGTTTGATCCCCAGATACGGAAAATTGTCTCTCAGATTCGCCCAGACCGTCAAACTTTGTATTGGAGTGCTACTTGGCCAAAGGAGGTTGAACAATTAGCAAGGCAGTTCCTTTACAATCCATACAAAGTAATTATAGGTTCTGAAGATTTAAAAGCTAACCATGCTATAAAGCAATATGTTGACATTGTTCCCGAAAAGCAAAAATACGACAAATTGGTGAAGTTGTTGGAGGACATCATGGATGGAAGTCGAATATTGATATTCATGGATACAAAAAAAGGATGTGATCAGATTACTAGGCAGCTCCGTATGGATGGTTGGCCAGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTTTCAGAGTTTAAATCTGGAAAGAGTCCTATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAATACGTCATAAATTACGACTTCCCGGGATCACTAGAAGATTATGTTCATCGAATTGGAAGGACTGGGAGAGCTGGTGCAAAAGGCACTGCATACACATTCTTTACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAAGCATACTTGAGGAAGCTGGACAGAGAGTGAGCTCTGAGCTGGCAGCAATGGGGCGTGGTGCACCTCCTCCGCCTTCAGGAGGCTTCCGAGACCGTGGGAAGAGTTTTGGCAGCGGTCGCCCATGGAGCTGA 1509 0.4467 MSRYDSRSSDPTSYRDRRSDSGLGGGGGSVAAPSSRRDYDDGGSGSPKKINLDGLPHFEKNFYNESPSVRAMTEAEVIEYRRRREITVEGKDVPKPVKSFSDAAFPEYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSSELAAMGRGAPPPPSGGFRDRGKSFGSGRPWS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07315 502 CDD DEADc_DDX5_DDX17 109 304 - -
Vivi2g07315 502 FunFam probable ATP-dependent RNA helicase DDX17 60 307 - -
Vivi2g07315 502 MobiDBLite consensus disorder prediction 1 17 - -
Vivi2g07315 502 MobiDBLite consensus disorder prediction 474 502 - -
Vivi2g07315 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 477 IPR001650 -
Vivi2g07315 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 304 IPR014001 -
Vivi2g07315 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 126 IPR014014 GO:0003724
Vivi2g07315 502 SMART helicmild6 357 438 IPR001650 -
Vivi2g07315 502 MobiDBLite consensus disorder prediction 1 53 - -
Vivi2g07315 502 FunFam ATP-dependent RNA helicase RhlB 308 480 - -
Vivi2g07315 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 476 - -
Vivi2g07315 502 Pfam DEAD/DEAH box helicase 122 293 IPR011545 GO:0003676|GO:0005524
Vivi2g07315 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
Vivi2g07315 502 Pfam Helicase conserved C-terminal domain 329 438 IPR001650 -
Vivi2g07315 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 454 IPR027417 -
Vivi2g07315 502 CDD SF2_C_DEAD 317 447 - -
Vivi2g07315 502 Gene3D - 310 476 IPR027417 -
Vivi2g07315 502 SMART ultradead3 117 320 IPR014001 -
Vivi2g07315 502 Gene3D - 61 308 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07315 Vivi-Chr2 217068152 217074227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07315 85 476 Eukaryotic Initiation Factors Gene Family AT3G19760 34.351 1.40e-77 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07315 K12823 - gmx:100790464 880.552