Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07309 ATGGACACCGAAGAAGACCCTCCTCAAAATCAGACCAAAAGACAGAAATGCTCAGCATGCTATAAACAATATAAAAAGAAAGAACATCTTATTGAGCACATGAAAACCTCTTACCACTCTATCCATCAGCCGGAGTGTGCGATCTGTAGAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAGCATCTTATGGGACCTTTGGCTAGAGGACTTTGTTCAGCGATATTCTCGAAAGGGGGTTGTAAACTTTGTTTGACACTAACTGATAGTCCTGCTTCTCTCAGTGAGCATCTAGAAACCTGTCAACTATCTGCTCCTGTTCCTCTTGGCACAAGTGAATTGCCCTATACAGACTCCAATATCGATTTTTTGGATTCTTATGATGAAAACGATGCTGACCGGCGTCCTAAAGCAGTTGCGTTGGACTGTGAAATGGTTGGGGGTGGAAGTGATGGATCACTGGAAGTTTGTGCTAGAGTATGCTTGGTTGACGAAGATGAGAACTTAATCTTGCACACATATGTAAAGCCTCGACTCCCTGTTACTAATTATAGGTATGATATAACTGGGCTGACCGAAGAGCATCTTCGAGATGGTGTGCCACTTAAAGAAGTTCGGGAAAAGATATTGCAAATTTTATACAATGGAGAGTCCATTGGAAAAGTTAGATTGGATGGTGGAAAGGCCAGGCTTCTTGTAGGGCATTCGTTGGCATATGATTTAGATTGCTTGGAAATGAGTTATCCTGATCACTTGTTGAGGTAG 765 0.4222 MDTEEDPPQNQTKRQKCSACYKQYKKKEHLIEHMKTSYHSIHQPECAICRKHCKSFESLREHLMGPLARGLCSAIFSKGGCKLCLTLTDSPASLSEHLETCQLSAPVPLGTSELPYTDSNIDFLDSYDENDADRRPKAVALDCEMVGGGSDGSLEVCARVCLVDEDENLILHTYVKPRLPVTNYRYDITGLTEEHLRDGVPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHSLAYDLDCLEMSYPDHLLR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07309 254 SUPERFAMILY Ribonuclease H-like 138 249 IPR012337 -
Vivi2g07309 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Vivi2g07309 254 Gene3D Classic Zinc Finger 2 65 - -
Vivi2g07309 254 Gene3D - 134 254 IPR036397 GO:0003676
Vivi2g07309 254 Pfam Exonuclease 139 249 IPR013520 -
Vivi2g07309 254 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Vivi2g07309 254 SMART exoiiiendus 137 254 IPR013520 -
Vivi2g07309 254 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 249 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07309 Vivi-Chr2 217024558 217026308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07309 1 254 C2H2 Transcription Factor Family AT3G27970 51.163 1.39e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07309 K18327 - gmx:100788682 408.683