Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07292 ATGTCTCAAAGAATCGGAACAAAGCTATTTGTCAGCAGACTATCATTCTACACTACAAACGACCAGTTCGTGAAATTGTTCTCACCATTCGGAGCACTTAAAGAAGCTTCACTTGTGGTAGACCCAAAAACCAAAAGAACTAAAGGTTTTGGTTTTGTCTCCTATGAGTCTGAAATTGAAGCAGAAAAGGCTATGAAAGCTTTAAATGGAAGGATAGTTGATGGAAGGCTAATTTTTGTTGAACCTGCAAAATTGAAGGATTCTTGA 267 0.3745 MSQRIGTKLFVSRLSFYTTNDQFVKLFSPFGALKEASLVVDPKTKRTKGFGFVSYESEIEAEKAMKALNGRIVDGRLIFVEPAKLKDS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07292 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vivi2g07292 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vivi2g07292 88 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 8 83 - -
Vivi2g07292 88 Gene3D - 2 88 IPR012677 -
Vivi2g07292 88 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 88 - -
Vivi2g07292 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vivi2g07292 88 SUPERFAMILY RNA-binding domain, RBD 6 84 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07292 Vivi-Chr2 216682748 216684536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07292 11 81 Eukaryotic Initiation Factors Gene Family AT5G06000 39.437 4.43e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07292 - K13195 pcin:129306862 129.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07292 2 216682748 216684536 Vivi2g07292 2 216682748 216684536 ECH