Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07281 ATGGTTCAATCTGAGGAAGTACGAAAAGGGCCATGGACAGAACAAGAAGACTTCAAATTGGTGTCATTTGTTGGATTGTTTGGAGACAGAAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACTGGTAAGAGTTGTAGGTTAAGATGGGTTAACTATCTTCATCCTGGTCTCAAACGTGGTAAGATGACACCTCATGAAGAACGTCTCGTCCTTGAACTTCAATCCAAATGGGGAAATAGGTGGTCGAGAATTGCTCGAAAGTTACCTGGACGAACGGATAATGAGATAAAGAATTATTGGAGAACTCACATGAGGAAGAAAGCTCAGGACAAAAAGAGAAACTCATCAGCTCCATGTATAGAACATCATGTTTCAAAAGATGCTGAAGAAACAAGTTTTTATGACACAGGAGGATCAAGAGTATCAACACAAGTCAAACAACATGAACAAGAAGAGATTTCAATGGATGATATATGGAAAGATATTGATATATCAGAAGAGAATAGTGGTCTTGAGAATGAAGAATTTTGCAATGATAATAATAATAAAAATAACAACATATCATGTTCTCTACCAATGAGTTCTTCATCATGGGAGTATAATTCCTCAAACTCACTATGGGTGATGGATGAAGAAAGCATGTTATTCCCTAAGAGTGATGACCCTTATTTTTCTTACTATGCTAATTACTAA 702 0.3647 MVQSEEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPHEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQDKKRNSSAPCIEHHVSKDAEETSFYDTGGSRVSTQVKQHEQEEISMDDIWKDIDISEENSGLENEEFCNDNNNKNNNISCSLPMSSSSWEYNSSNSLWVMDEESMLFPKSDDPYFSYYANY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07281 233 MobiDBLite consensus disorder prediction 134 153 - -
Vivi2g07281 233 SMART sant 8 58 IPR001005 -
Vivi2g07281 233 SMART sant 61 109 IPR001005 -
Vivi2g07281 233 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vivi2g07281 233 Gene3D - 9 61 - -
Vivi2g07281 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vivi2g07281 233 CDD SANT 64 107 IPR001005 -
Vivi2g07281 233 FunFam Myb transcription factor 9 61 - -
Vivi2g07281 233 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi2g07281 233 CDD SANT 11 56 IPR001005 -
Vivi2g07281 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Vivi2g07281 233 Gene3D - 64 135 - -
Vivi2g07281 233 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vivi2g07281 233 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Vivi2g07281 233 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vivi2g07281 233 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vivi2g07281 233 FunFam MYB transcription factor 64 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07281 Vivi-Chr2 216572574 216573926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07281 1 215 MYB Transcription Factor Family AT5G59780 61.644 4.30e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g07281 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07281 K09422 - qsa:O6P43_028279 278.87