Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07279 ATGGCTCCTAAAGGTGATGTTTCGAAGAAGACTGATCCAAAGGCACAGGCCTTGAAAGCTGCCAAGGCAGTGAAGTCAGGGACTGCCATTAAGAAGAAGGCAAAGAAGATCAGGACAACTGTTACATTCCACAGGCCCAAGACTTTGTCGAAGGAAAGGAACCCTAAGTACCCTCGCATTAGTGCGACACCAAGGAATAAGCTTGATCATTATCAGATTCTCAAGTTTCCACTCACTACTGAGTCTGCAATGAAGAAGATTGAAGATAATAACACCTTGGTTTTCATTGTTGACTTGCGTGCTGACAAGAAGAAAATCAAAGATGCTGTGAAGAAGATGTATGACATTCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCGTATGTTAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGTATCATTTAA 462 0.4264 MAPKGDVSKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSKERNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07279 153 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vivi2g07279 153 Pfam Ribosomal protein L23, N-terminal domain 14 62 IPR005633 -
Vivi2g07279 153 Gene3D - 34 153 IPR012677 -
Vivi2g07279 153 Hamap 50S ribosomal protein L23 [rplW]. 73 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vivi2g07279 153 ProSitePatterns Ribosomal protein L23 signature. 131 146 IPR001014 GO:0019843
Vivi2g07279 153 MobiDBLite consensus disorder prediction 1 22 - -
Vivi2g07279 153 MobiDBLite consensus disorder prediction 1 16 - -
Vivi2g07279 153 NCBIfam 50S ribosomal protein L23 77 153 IPR019985 GO:0003735|GO:0005840|GO:0006412
Vivi2g07279 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 70 146 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vivi2g07279 153 Pfam Ribosomal protein L23 73 135 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vivi2g07279 153 FunFam 60S ribosomal protein L23a 31 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07279 Vivi-Chr2 216531709 216533051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07279 26 153 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.625 8.54e-69 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07279 K02893 - csav:115705011 257.299