Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g07240 | ATGGCTGAAGAAAGAGTTGAATTCACTCTTAATGTTTCTAAAGGTCAATCAAGGAATCGACAAAACCTAAAACCCACATACTCATTAGATATCTTTAAGTTAGATATATCGGCTATACTTCGAAATCATTCAAACCCTTCAAGCCCGATTTTGAATGTATCAACCATGTTTGAAAAATCAATATTCATAAATTGCGAACACTTCTTCGCACAGAACCACCATATGCTATGGTTTTACCTACATAGAATCACCTTGCCATTCCCTTATTTCACTTTTGAAAATCTTTCTCAAATAATAAGAAATCTAATACATCAAGTCAAACGATTATTTGATATCTCTGATCATTTTATTGGAGTTGCAGAACCAATGAATAATGATCATAGAGATGCGATTATTCCCATGGTTCTAAATATTTTTGTTGATGTGTATCCATCTGAAGAAAGAAGAAATCAAGAGATTATAGAAGAATCTATGCAATTTATTAAAATGATTCCTGCATCTAATGAAGCTATCTTATCTTTAAAAAGTTACTCACTTCCTCAAAATTGTTCCATATGCATGGAGAAATTTCATGATGATTTAAAAGAAGATGATAGTGATGACGTGAAGGTTTCAACAATGACATGTGGTCATATATTTCACTACAATTGCATTGTGCAATGGCTTCAAGCCAGTCATGTATGTCCCTTGTGCCGTTATGCAATGCCTACTTGA | 714 | 0.3291 | MAEERVEFTLNVSKGQSRNRQNLKPTYSLDIFKLDISAILRNHSNPSSPILNVSTMFEKSIFINCEHFFAQNHHMLWFYLHRITLPFPYFTFENLSQIIRNLIHQVKRLFDISDHFIGVAEPMNNDHRDAIIPMVLNIFVDVYPSEERRNQEIIEESMQFIKMIPASNEAILSLKSYSLPQNCSICMEKFHDDLKEDDSDDVKVSTMTCGHIFHYNCIVQWLQASHVCPLCRYAMPT | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g07240 | 237 | SMART | ring_2 | 183 | 231 | IPR001841 | - | |
| Vivi2g07240 | 237 | ProSiteProfiles | Zinc finger RING-type profile. | 183 | 232 | IPR001841 | - | |
| Vivi2g07240 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 237 | IPR013083 | - | |
| Vivi2g07240 | 237 | SUPERFAMILY | RING/U-box | 182 | 235 | - | - | |
| Vivi2g07240 | 237 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 125 | 236 | - | - | |
| Vivi2g07240 | 237 | Pfam | RING-H2 zinc finger domain | 181 | 232 | IPR024766 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g07240 | Vivi-Chr2 | 215964688 | 215965401 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi2g07240 | 156 | 236 | C3H Transcription Factor Family | AT1G18760 | 34.483 | 3.20e-12 | 62.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g07240 | - | - | psat:127082431 | 381.719 |