Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07239 ATGGTGAGCAGCATAGACGTTGTAGTGGATCATAGAGATGCGATTATTCCCGTGGTTCTAAATATTTTTGTTGACGTGTATCCATCTGAAGAAAGAAGAAATCAAGAGATTATAGAAGAGTCTATGCAATTTGTCAAAATGATTCCTGCATCTAATGAAGCTATCTTATCTTTAAAAAGCTACTCACTTCCTCAAAATTGTTCAATATGCATGGAGAAATTTCATGATGATTTAAAAGAAGATGATAGTGATGACGTGAAGGTTTCAACAATGGCATGTGGTCATATATTTCACTATAATTGCATTGTGCAATGGCTACAAACAAGTCATGTATGTCCCTTGTGCCGCTATGCTATGCCTACTTGA 366 0.3579 MVSSIDVVVDHRDAIIPVVLNIFVDVYPSEERRNQEIIEESMQFVKMIPASNEAILSLKSYSLPQNCSICMEKFHDDLKEDDSDDVKVSTMACGHIFHYNCIVQWLQTSHVCPLCRYAMPT 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07239 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 121 IPR013083 -
Vivi2g07239 121 ProSiteProfiles Zinc finger RING-type profile. 67 116 IPR001841 -
Vivi2g07239 121 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 40 120 - -
Vivi2g07239 121 SMART ring_2 67 115 IPR001841 -
Vivi2g07239 121 Pfam RING-H2 zinc finger domain 65 116 IPR024766 GO:0008270
Vivi2g07239 121 SUPERFAMILY RING/U-box 66 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07239 Vivi-Chr2 215958192 215958557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07239 40 120 C3H Transcription Factor Family AT1G18760 34.483 1.02e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07239 - - vvo:131651310 246.514