Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07235 ATGAATGTATCAACCATGTTTGAAAAATCAATATTCATAAACTGCGAACATTTCTTCGCACGTAACTCATATGTATTATGGTTTTATTTACATAGAATCACCTCATCATTCCCTTATTTTACTTTTGAAAACCTTAACCGGATAACAAGAAATTTAATACCTCAAGTCAAAGAGTTATTCGACATCTCTCATGATTTTGTTGGACTTGAAGAACCAATGAATAATGAATATCGAGAGAAAGTTATTCCCGTGATTCTAAATATTTTTGTGGACGTGTATCCATGTGAAGAAAGAAGAAATCAAGAGATGATAGAAGAGTCCTTGCAATTTGTCAAAATGATTCCTGCATCCAACGAAGCTATCTTGTCTTTGAAGGCTTGTTCACTTCCTCGTAATTGTTCCATATGCTTAGAGAAGTTTCACGATGATTTAGAAGAAGATGGTGATGGTGATAACGTGAAAGTTTCAACAATGGCGTGTGGCCATATATTTCACTATAATTGTATTGTGGAGTGGCTACAAACAAGTCATGTATGTCCTTTATGTCGTTATGCTATGCCTACTTGA 567 0.3439 MNVSTMFEKSIFINCEHFFARNSYVLWFYLHRITSSFPYFTFENLNRITRNLIPQVKELFDISHDFVGLEEPMNNEYREKVIPVILNIFVDVYPCEERRNQEMIEESLQFVKMIPASNEAILSLKACSLPRNCSICLEKFHDDLEEDGDGDNVKVSTMACGHIFHYNCIVEWLQTSHVCPLCRYAMPT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07235 188 ProSiteProfiles Zinc finger RING-type profile. 133 183 IPR001841 -
Vivi2g07235 188 Pfam RING-H2 zinc finger domain 132 183 IPR024766 GO:0008270
Vivi2g07235 188 SUPERFAMILY RING/U-box 132 186 - -
Vivi2g07235 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 187 - -
Vivi2g07235 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 188 IPR013083 -
Vivi2g07235 188 SMART ring_2 133 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07235 Vivi-Chr2 215825087 215825653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07235 101 187 C3H Transcription Factor Family AT1G18760 34.375 1.99e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07235 - - vvo:131651309 397.127