Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07226 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGTCCATGGTCACCTGAAGAAGATTCAAAGCTCAAAGAGTACATAGAAAGAAATGGAACTGGTGGAAACTGGATTTCCCTTCCTCAAAAAGCTGGTCTAAGAAGATGTGGAAAAAGTTGCAGATTAAGATGGCTTAACTATTTAAGGCCAAACATCAAACATGGAGAATTTTCAGATGAAGAAGACAGAATCATTTGCACCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATTGCTGCACAGTTACCTGGAAGAACTGATAATGATATCAAAAACTACTGGAACACAAAACTCAAGAAGAAACTCATGAGTTTTCTTCCTCAATCTCATACCTCACTTTTACCCTATCAAAACCCTAATTCATTTCCTTCTCAACATTGCACTTCATATTACAACCAAATTTCACAACCAAACACATCCTTCACCACAAGCCTTGAACCAATCTCTCTTCCCTTTTACCATAACCAAGACTCCTTGCTTAGTGGTGCTAGTCTTAGCACTAATACTAGTAGTATAATAACTTCCATGCAATATCATCATCCTATGAGAGAGAGTAGTTTTGCCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCATCAGAGGGAAGTTTTGGGAAACAAGAAGAAATAATGGGGTTTCAGACTCTCATGCAAAGTAACAGCATGATCAATCTGAGTCATGGAAGTGATGTTAACCAATGGGAAAGTGAAACAGAAAAAGTGAACCTGTGCTTTAGTCAAAATCAAAAGCAAATTCTTCCAAGTTCTTTAGGGTATGATCTTGAGTATATTAAGCAGTTAATTAGTAGTGATAATGGTTACTTGAGTATTGATGAAAACAAGACTGAAGAGAAGGGTATGTACTACTACTACTGA 921 0.3735 MGRAPCCDKANVKKGPWSPEEDSKLKEYIERNGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMSFLPQSHTSLLPYQNPNSFPSQHCTSYYNQISQPNTSFTTSLEPISLPFYHNQDSLLSGASLSTNTSSIITSMQYHHPMRESSFAMFGSEGSCCSSSEGSFGKQEEIMGFQTLMQSNSMINLSHGSDVNQWESETEKVNLCFSQNQKQILPSSLGYDLEYIKQLISSDNGYLSIDENKTEEKGMYYYY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07226 306 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vivi2g07226 306 PANTHER OS09G0431300 PROTEIN 1 254 - -
Vivi2g07226 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi2g07226 306 Gene3D - 70 135 - -
Vivi2g07226 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi2g07226 306 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vivi2g07226 306 CDD SANT 16 62 IPR001005 -
Vivi2g07226 306 SMART sant 13 64 IPR001005 -
Vivi2g07226 306 SMART sant 67 115 IPR001005 -
Vivi2g07226 306 Gene3D - 7 68 - -
Vivi2g07226 306 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi2g07226 306 FunFam Transcription factor RAX3 7 68 - -
Vivi2g07226 306 CDD SANT 70 113 IPR001005 -
Vivi2g07226 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi2g07226 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07226 Vivi-Chr2 215715846 215717915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07226 1 119 MYB Transcription Factor Family AT5G65790 87.395 2.12e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g07226 Myb_DNA-binding 5.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07226 K09422 - gmx:100796382 350.132