LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g07220	ATGTACACCTACCTAGTACCTACTATGAATCCTTCAGAGATAGAATCTCTGTCAGTTACCTTCCATGGACATGATCTTATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGGAAATCTACCCTACTTACAGCAATAGGGTTACGTGAACTTCCTATTCCTGAGCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGACGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAATTCTGGGTGCACAGGATGATGGCGGTGGTGAAGCACTTGAACGAGTTTATGAGCGACTGGAAGCTATGGATGCATCAACAGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAAGAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGATGGAGAATGAGGATTGCTTTAGCACGAGCCCTATTTATGAACCCAACCATTCTTCTTCTTGATGAACCAACCAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGACCGCATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACTCGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTATAGATGGGAGCAGGAGCAGATCGCCTCAATGAAGGAATACATTGCTCGATTTGGCCATGGATCAGCAAAACTAGCTCGTCAAGCTCAGAGTAAAGAGAAGACTCTTGCAAAAATGGAGCGCGGTGGACTTACAGAGAAGGTGGTAAGAGACAAGATTTTAGTTTTCCGCTTCGTTGATGTGGGTAAACTTCCCCCACCCGTCCTCCAGTTTGTGGAGGTGACGTTTGGATACACTCCCGATAATCTTATCTACAAGAGCATCGACTTTGGGGTTGACTTAGACTCCAGAATTGCTTTGGTTGGACCTAATGGAGCTGGAAAGAGCACATTCCTAAAGCTCATAACCGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGTCATAACCACCTTCGCATTGCACAATTTCACCAGCACTTGACTGAAAAGCTAGACCTGGAACTGTCTGCCCTTCAATTTATGATTAAAGAATACCCTGGAAATGAAGAAGAGAGAATGAGAGCAGCTATTGGGAAGTTCGGATTGTCGGGTAAAGCACAGGTGATGCCTATGAGAAATTTATCAGACGGACAAAGGAGTCGCGTGATCTTTGCATGGTTAGCCTACAGACAACCTCACTTGCTTCTCTTAGACGAGCCAACTAATCATTTAGATATCGAGACAATCGACTCTTTAGCCGAGGCACTGAATGAATGGGATGGTGGCCTGGTACTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTAGCTCATGAGATATGGGTCTGTGCTGATCAAACTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGCAGCATTTAAAGGCAAAGGCAGGTTTAGCTGACTGA	1617	0.4372	MYTYLVPTMNPSEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGLRELPIPEHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKEMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQSKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKSIDFGVDLDSRIALVGPNGAGKSTFLKLITGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD	538

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g07220	538	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	12	252	IPR003439	GO:0005524
	Vivi2g07220	538	FunFam	ATP-binding cassette sub-family F member 3	283	537	-	-
	Vivi2g07220	538	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	13	533	-	-
	Vivi2g07220	538	Coils	Coil	230	250	-	-
	Vivi2g07220	538	Gene3D	-	298	536	IPR027417	-
	Vivi2g07220	538	SMART	AAA_5	36	238	IPR003593	GO:0016887
	Vivi2g07220	538	SMART	AAA_5	348	515	IPR003593	GO:0016887
	Vivi2g07220	538	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	323	538	IPR003439	GO:0005524
	Vivi2g07220	538	FunFam	Abc transporter f family member 1	12	276	-	-
	Vivi2g07220	538	Pfam	ABC transporter	30	184	IPR003439	GO:0005524
	Vivi2g07220	538	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	306	517	IPR027417	-
	Vivi2g07220	538	CDD	ABCF_EF-3	323	515	-	-
	Vivi2g07220	538	Gene3D	-	13	276	IPR027417	-
	Vivi2g07220	538	Pfam	ABC transporter	223	295	IPR032781	-
	Vivi2g07220	538	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	13	254	IPR027417	-
	Vivi2g07220	538	Pfam	ABC transporter	340	470	IPR003439	GO:0005524
	Vivi2g07220	538	CDD	ABCF_EF-3	13	229	-	-
	Vivi2g07220	538	ProSitePatterns	ABC transporters family signature.	156	170	IPR017871	GO:0005524\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g07220	Vivi-Chr2	215597991	215602298	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g07220	323	516	Calmodulin-binding Proteins	AT2G36910	26.667	2.50e-09	58.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi2g07220	2	215597991	215602298	Vivi2g07220	2	215597991	215602298	ECH
	Vivi2g07220	2	215597991	215602298	Vivi5g02288	5	96752585	96756885	PCT