Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07200 ATGCAGGATCTTGTTCAAGTTAGAAGCCTTAGAAATGGTTATTATAACAACCATGAAGAACCTGTTGTTCTTTATTCCTCATCAGAAAACCCTAACTTCTTTACTACTTTGAATCCTTTGGAGTATCAGGAACAACTTGGTGCAAGTGCAGAAGAATCAAGTAGGTTATTCATGATGCAACATCATCATCATCAACAACAGCAGCAGTATGGTTCATATGCTAGTTCTTTGACTGATTTTCATTCTCCTCAACAAAAGCAAGTGAGTGATTTTGGAAACTGGAGAAACAGTACTGTTCAACATCAAGTCACTGATAGGTTTTTAAATAATGCAACAAATTCTCTTCCATGTGTTTATGGCGGTGATAAGCAACTAGGTCAAGTCATGCATCATACTCCTACTTCTTCAGCACTGTTTCAGAATCATTCTTTGCAAGAAATTGTCAAGTCCATCAATTCCAATGGCTCAGATTCTCACATCACATCACTCATGCATCATAACAATGCTCAAGAAATTTGTGTAGTGAATGCTTCTGAACTTCAACATCAACCAAATCAGTTTGAGTTTGGATGGAAAAATCAAACTGATTCAAATCCACAAAGCTTATCATTATCACTCTCATCTAAGGCTCATGTTTCTCAGTTTAAAGAGGAGGATCCATATGTGAAGCCTTCTTTTGTTACTAGAGATTGTGGAAAACCACTTCAAGATTTGGTGGTTGGATCAATACCTAATTCAAAGACTACTACTAGTTATGGAAATGTGGGTCCACTTGGCCCTTTCACTGGTTATGCCACTATTCTTAAAAATTCAAGATTCTTAAAGACTGCCCAAAATTTGTTATCAGAAGTTTGCTGTCCAAAATCTGTTCATTCATGTTCATCATCATCTATGTTTCATGGTACAAAAGAAAATAGAGCTGATTGGGGATCTAGAAGTAGTTTTGGTGTTTCTTTGCAGCCAGATTATCAACAAAATAAAGCAAAACTTGTGTACATGCAAGAAGAGGTCAACAGGAGATACAAGCAGTACCAACACCAAATGCAAATGGTATTTTCATCTTTTGAATCAGTAGCAGGCCTGAATTCAGCTACTCCTTACATCACCTTGGCTTTGAAGTTAGTATCAAAACACTTCAAGGGCCTAAACAATTCTATTTCAAATCAACTCAAACTTATAAGTGAAGTTATGCAGAATGATTCTTCAATAGCCACCATAAACAATAGTACTCACCTTGTTGACACTAATAATGTGGCAAGCGTAAGGTGGATGGACCAAAGCATGCAAAAGAGCAAACTTGAAAAGGTTATAACAGGTTTTCATGATCCACAGCAACATCATGTTTGGAGGCCTCAAAGAGGCTTCCCTGAACGCGCGGTTGCGATTCTTAGAGCTTGGTTGTTTGAACATTTTCTTCACCCTTATCCCACAGACACTGATAAACACATGTTGGCTACTAAGACAGGCCTTTCACGAAACCAGGTATCAAATTGGTTTATCAATGCTCGAGTTCGTGTGTGGAAGCCTATGGTTGAGGAAGTACACATGCTTGACCAAAAAACAACCGGTACCGATGAGAATTCCAATCGAAATGAAGGAACTTCCAGCACCGAAGGCGGCTCATTCAACCAGGCTAAAATGGATAAAACAGTGAACAGGTTTTTTATGCATTCAATACCTGAAAACCCGATTCAGGATATGGAGTTTGGTACATCTATAGATAGAAATGCAGATGAAAGCGAGTTGAATGAAGCTGAACAATGGAGACAAGAGAAGCGGTCGAAATTGGAATGTGAAATGAGTTCAAGAATGGATGGAACACTGATGGATTTTTTGCCATATAGACATAGTGGACATGATGTTGGGGGATCACTTGGGTCTGTGTCATTGACATTAGGTCTTAGGCATGGTGTTGAAGGTGTACAACACCAAGATGTTCAATTTAGACATCATCATCACCTTGGTGGACAAATGATACATGACTTTGTAGGATGA 1995 0.385 MQDLVQVRSLRNGYYNNHEEPVVLYSSSENPNFFTTLNPLEYQEQLGASAEESSRLFMMQHHHHQQQQQYGSYASSLTDFHSPQQKQVSDFGNWRNSTVQHQVTDRFLNNATNSLPCVYGGDKQLGQVMHHTPTSSALFQNHSLQEIVKSINSNGSDSHITSLMHHNNAQEICVVNASELQHQPNQFEFGWKNQTDSNPQSLSLSLSSKAHVSQFKEEDPYVKPSFVTRDCGKPLQDLVVGSIPNSKTTTSYGNVGPLGPFTGYATILKNSRFLKTAQNLLSEVCCPKSVHSCSSSSMFHGTKENRADWGSRSSFGVSLQPDYQQNKAKLVYMQEEVNRRYKQYQHQMQMVFSSFESVAGLNSATPYITLALKLVSKHFKGLNNSISNQLKLISEVMQNDSSIATINNSTHLVDTNNVASVRWMDQSMQKSKLEKVITGFHDPQQHHVWRPQRGFPERAVAILRAWLFEHFLHPYPTDTDKHMLATKTGLSRNQVSNWFINARVRVWKPMVEEVHMLDQKTTGTDENSNRNEGTSSTEGGSFNQAKMDKTVNRFFMHSIPENPIQDMEFGTSIDRNADESELNEAEQWRQEKRSKLECEMSSRMDGTLMDFLPYRHSGHDVGGSLGSVSLTLGLRHGVEGVQHQDVQFRHHHHLGGQMIHDFVG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07200 664 Pfam Associated with HOX 267 387 IPR006563 -
Vivi2g07200 664 Pfam Homeobox KN domain 466 505 IPR008422 GO:0003677|GO:0006355
Vivi2g07200 664 SUPERFAMILY Homeodomain-like 450 515 IPR009057 -
Vivi2g07200 664 CDD homeodomain 449 510 IPR001356 GO:0003677
Vivi2g07200 664 SMART prehox3 262 388 IPR006563 -
Vivi2g07200 664 MobiDBLite consensus disorder prediction 518 544 - -
Vivi2g07200 664 MobiDBLite consensus disorder prediction 521 544 - -
Vivi2g07200 664 ProSiteProfiles 'Homeobox' domain profile. 446 509 IPR001356 GO:0003677
Vivi2g07200 664 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 533 - -
Vivi2g07200 664 FunFam BEL1-like homeodomain protein 9 452 514 - -
Vivi2g07200 664 Gene3D - 452 514 - -
Vivi2g07200 664 SMART HOX_1 449 513 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07200 Vivi-Chr2 215209413 215211923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07200 199 537 Homeobox Transcription Factor Family AT5G02030 46.459 7.82e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi2g07200 POX 6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07200 - - vvo:131621397 1224.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07200 2 215209413 215211923 Vivi2g07200 2 215209413 215211923 ECH
Vivi2g07200 2 215209413 215211923 Vivi5g02339 5 99491513 99499186 PCT