Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07177 ATGCCTGAGGATATTCCTAACATGAAGGACTCTTGGTTTTTTGACAAGAATTTTAATGGATTGTCGGATGAGATTTTCGATGAGCTTCATTTTTTTGATTTTCCGTTAGAAGATGTTGAGACTAATCCCGTTGAAGAAGATTGGAGTGCTCGATTTCAAAGCATTGATGAGCCGTGTTTTGATGCTTTTTCAGTGACACCAGTGGGATTGTGTGGCAAAACTAAAAATGAAAATCTCCAAGTTGGGAATGGCTTCTCTGCTGCTCCTTGTAACGAAATTTCCTCAATGAAAGAAGTGGCAAAGACTGTTGGACCAACATATGGAAAAACTATTCCCAATCAGGATGCCTCTTTATATGGAAAAACTATTCCTAACCAGGACGCCTCTTTCTATGAAAAGAAAGTTTTGCTTCAATACAGCCCAGTTTCTGTTTTCGAAGGCAGTAGTGGTGCTTCCTCAGTTGAGAATTCCACCTTTGACCTGCCCGTCTTCCCAATAAAGCGCCCTCGAAGTAAACGCCGGCGTCCCTCAAAGTCAAATCCTGTATTTTCATTTTCTTTCATACCGAATTCACCGACATTGCAAAAACATTATAAAACACATGTCTCTAAGAAACAGAGAAAAAAGGACGTCTACGTGCCCTCAGGCGATGCTGATACGGGATCTCAAGAGTCAGTTACCTTCAGAAAATGCACGCATTGCGAGATCACAAAGACTCCACAATGGAGAGAGGGACCTAACGGTCCCAAAACGCTCTGCAATGCTTGTGGTGTTCGGTACAGGTCAGGCCGCCTCTATCCTGAATACCGTCCAGCAAACAGCCCCACTTTTGTAGAATCAGTTCACTCAAACTGTCACAAGAAGGTTCTCGAGATGCGAGGCGGCAGTCTCATCAAAGGAGGTGCTGCTAGAAGCTGTTCTACGTCGCTGCCATCAACTCTTCCCGGAAACTCGGTAGGACAGCATTATCATGGAACTTATTGA 984 0.438 MPEDIPNMKDSWFFDKNFNGLSDEIFDELHFFDFPLEDVETNPVEEDWSARFQSIDEPCFDAFSVTPVGLCGKTKNENLQVGNGFSAAPCNEISSMKEVAKTVGPTYGKTIPNQDASLYGKTIPNQDASFYEKKVLLQYSPVSVFEGSSGASSVENSTFDLPVFPIKRPRSKRRRPSKSNPVFSFSFIPNSPTLQKHYKTHVSKKQRKKDVYVPSGDADTGSQESVTFRKCTHCEITKTPQWREGPNGPKTLCNACGVRYRSGRLYPEYRPANSPTFVESVHSNCHKKVLEMRGGSLIKGGAARSCSTSLPSTLPGNSVGQHYHGTY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07177 327 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Vivi2g07177 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 228 286 - -
Vivi2g07177 327 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Vivi2g07177 327 ProSiteProfiles GATA-type zinc finger domain profile. 229 261 IPR000679 GO:0006355|GO:0043565
Vivi2g07177 327 Gene3D - 226 276 IPR013088 GO:0006355|GO:0008270
Vivi2g07177 327 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Vivi2g07177 327 FunFam GATA transcription factor 221 304 - -
Vivi2g07177 327 PANTHER GATA TRANSCRIPTION FACTOR 41 294 - -
Vivi2g07177 327 MobiDBLite consensus disorder prediction 197 223 - -
Vivi2g07177 327 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07177 Vivi-Chr2 214907089 214912776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07177 21 293 C2C2-Gata Transcription Factor Family AT1G08000 39.146 5.15e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi2g07177 GATA 2.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07177 - - psat:127087059 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07177 2 214907089 214912776 Vivi2g07177 2 214907089 214912776 ECH
Vivi2g07177 2 214907089 214912776 Vivi5g02381 5 101053797 101056986 PCT