Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07176 ATGAAGGAAGGTGAGAAAAGCTTAGATCCGCAACTATGGCACGCGTGTGCTGGAGGAATGGTTCAAATGCCATCAGTGAACAGTAAAGTTTTCTACTTTCCTCAAGGGCATGCAGAACATGCTCAATCCAATGTTGATTTTGGAGATTCTTTCAGAATTCCACCGCTTGTTCTATGTCGTGTAGCTTCTGTGAAATTCTTGGCTGACCCTGAAACAGATGAAGTGTTTTCGAAGATAAAGTTGATTCCTTTGAGAAATTCTGAGATTGAGAATGAAGATTGTGATGGTTTTAATGGTGATGGTTCTGAGAGTTCTGAAAAGCCTGCTTCTTTTGCAAAGACTTTGACTCAATCTGATGCAAACAATGGTGGAGGGTTTTCGGTTCCGAGATACTGCGCTGAGACGATTTTTCCTCGGCTCGATTACTCGGCTGAGCCTCCGGTTCAGACGGTGATTGCGAAGGATGTTCATGGTGAGGTTTGGAAGTTTAGACATATCTATAGAGGAACACCGAGGAGGCATTTGTTGACAACTGGTTGGAGTAGTTTTGTGAATCAGAAAAAGCTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGGTGAAAATGGTGAACTTTACGTTGGGATTCGTCGCGCGAAGAGAGGGATAGTGAATGGATTGGAATCACCTTCTGGGTGGAGTTCTGGTAATGGAAGTTCTGGTCTTGGAATTGGACCTTATGGTGGTGCTTTTTCGGTTTTTTTGAGGGAAGAGAATAACAAGTTGTTGAGAAATGGGGTTGGTGATGGAGGTGTTGGTGGTAATTTGGGAGGTGGAAGAGCGAAAGTGAGTGGTGAATCGGTGAAAGAAGCGATGAGATTTGCGGCTAGTAATCAAACATTCGAGGTTGTTTATTATCCGAGAGCGAGTACTCCTGAGTTTTGTGTTAAGGTTTCATCGGTTAAAGCTGCTATGAGAACTCAATGGTGTTCTGGTATGAGGTTTAAGATGCCATTTGAAACCGAGGATTCTTCGAGGATTAGTTGGTTCATGGGGACAATTTCGTCTGTTCATGTCGTCGATCCGATTCGTTGGCCTAATTCGCCTTGGAGACTTCTTCAGGTAACTTGGGACGAACCGGATTTGCTACACAATGTGAAGCGAGTTAGTCCGTGGTTGGTTGAATTAGTATCAAGCATGTCGGTGATTCATCTCTCGCCCTTTTCGCCACCGAGAAAGAAACTTCGTTTTCCACAACATCCCGATTTCCCTCTTGATGTTGTTCAGTTTCCGATACCGACGTTTACAGGCAACCCCCTCAACCCGTTGTGTTGTCTATCGTCTTCTTCCGATCATTATAACGCTCCTGCCGCAGGCATTCAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCGAGTTAACAACATCAACAATAATAGAATTCAGTTAGGTGTGTTTCCGAATAACCCCGAGACGATTTCTAATGATAAGAGCAAAGAAAGCTTATCGTGTTTGTTGACAATAGGAAACTCTCATAAGAGAAGTTTGGAGATAAATTCTGATAGTAATGTTAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATTCTCACCGAGCAACAAATCTCTAGAAAAGCTTCTAGTGATAAAGACAAAGAGAAATGGTTTTTAAGCGATACTTCTCAATCTTCGATTTCCGAACAGTTTTCACCGGGAAAATCTTCTACTACTACGACTAGTACTACTGAGTTTTGTTGGCAACAACTTGGATTAGATACCGGTCATTGTAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGAACCTTAGATTTGTCATGTGTTGGTTCTTATGAAGAACTATACAGGACACTGACTAAGATGTTTGGTTTAGAAAGATCCGAGATGTTGAGTCGTGTGGTCTATCGTGACGCAACAGGTACTGTCAAACAAATCGGTGAAGAACCCTTCAGTGATTTCATGAAAACAGCAAAAAGATTAACAATTCTGATGGATTCAGCTAGCAAGGAAACTAGAAGGGTTTGTATCACAGGAGCTAGGAATGGTGAATGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGCATATTTGCTTAA 2109 0.4211 MKEGEKSLDPQLWHACAGGMVQMPSVNSKVFYFPQGHAEHAQSNVDFGDSFRIPPLVLCRVASVKFLADPETDEVFSKIKLIPLRNSEIENEDCDGFNGDGSESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENGELYVGIRRAKRGIVNGLESPSGWSSGNGSSGLGIGPYGGAFSVFLREENNKLLRNGVGDGGVGGNLGGGRAKVSGESVKEAMRFAASNQTFEVVYYPRASTPEFCVKVSSVKAAMRTQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFTGNPLNPLCCLSSSSDHYNAPAAGIQGARHAQIGISLSDLRVNNINNNRIQLGVFPNNPETISNDKSKESLSCLLTIGNSHKRSLEINSDSNVKRHQFLLFGQPILTEQQISRKASSDKDKEKWFLSDTSQSSISEQFSPGKSSTTTTSTTEFCWQQLGLDTGHCKVFLESEDVGRTLDLSCVGSYEELYRTLTKMFGLERSEMLSRVVYRDATGTVKQIGEEPFSDFMKTAKRLTILMDSASKETRRVCITGARNGECGLDASNKTGPMSIFA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07176 702 SMART B3_2 111 213 IPR003340 GO:0003677
Vivi2g07176 702 Gene3D - 589 674 - -
Vivi2g07176 702 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi2g07176 702 Gene3D - 322 396 - -
Vivi2g07176 702 FunFam Auxin response factor 109 213 - -
Vivi2g07176 702 Gene3D - 109 213 IPR015300 -
Vivi2g07176 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Vivi2g07176 702 SUPERFAMILY DNA-binding pseudobarrel domain 104 212 IPR015300 -
Vivi2g07176 702 CDD B3_DNA 110 211 IPR003340 GO:0003677
Vivi2g07176 702 FunFam Auxin response factor 322 395 - -
Vivi2g07176 702 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Vivi2g07176 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi2g07176 702 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07176 Vivi-Chr2 214859916 214862619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07176 1 672 B3 DNA Binding Superfamily AT4G30080 58.140 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi2g07176 B3 1.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07176 - - gmx:100778135 964.14