Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07145 ATGAAAAGAACACTTTCTCTTCCGCTTCAGAAGGAAAATCTTCTGATGGAAATACCCTACAAAACATCAGAAAATTCATCTTCTTCTTCATCATCGTATTCGAACGAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACACCTTCTCACAAGAAGGTGAATTTTCTTGTGACTTCGCGTTCTGTCGATGCTCCAATTGTTGATAGTGATGGTAACAACAATCTAGGGATTTCAGCAAAAGAGAAATCGTCGAGTACTAGAAGTATTTTACCGAAATTGAACTTTAGGTATAATAGGACTTCGTCATCTGATGTTGAAAAGGGGATAAGTTTGGCTCCGGAAAGTCCTCATGAGAAGGCTTCAGTCTCGGGATCAGTGTCTTTGAGTAAGCTGTTTGCGCCGAAGATTTATAGAACTTCTTCGTTGCCGGTTGAAGAAATCGGGCGTGTGAATACTGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAAGGCTCGATAGCTCGCACTCGCTCAGAGCCCGTGGATAGCCAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCGTTGTTCCTTCCACCCCAGGTGCAAAGGAAATTAAAGAATGGTTAAAAACGTCCGCAAAAAAGGATACTGAAAATGACGGCGATAACGGTGAAGATATTGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGCGAGACGCTAAAGATGGAATGCAGTTGCAAAGGCGAACTTGCATTGGCTCACCAAGAATGTGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGGAAGAAGTTCAGAATCTCCCTGTCACTCTCTTGCGGATCCAAAATGTTCAAACTCAGAATACCGGAGCGAGGTCTCAGCAGGAAGATGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTTTGTTTCCTTGAGCAGCTTTTGGTTGGAAAAATGAGAACCAGAGCGATTTTCATTTCTCTTCCGTTTTCTTGTGTACTGGGTCTAGTCTCCGCCATGACATCAACAACCATGGTGAGGAACAAGTTCATCTGGCTTTATGCATCTGGACAATTTCTCTTGGTTGTTATCTTCGCACATATATTTTACCCCTTGGTTGGTAAGCAAGCAGTTTTAGCAATCCTTCTTGCATCATTTGCTGGATTTGGTGTAATGATGAGCGGAAGTTCAATATTTGGCGAGTTACTCAAATGGAGAAGAACATTTCGAGCTTGGGAGCGGCAGCAGCGCTCTCAAATGATGATGAGTGAAGGACTATATTCTCAAGGTGTAATTACCCCACAACCAAGCCTTCCCACCTACAACCAAGCTACAGTGCAACATCAAAATCAACTTAACTCAAATTCATAG 1446 0.426 MKRTLSLPLQKENLLMEIPYKTSENSSSSSSSYSNEFVAIKMPLTPSPTPSHKKVNFLVTSRSVDAPIVDSDGNNNLGISAKEKSSSTRSILPKLNFRYNRTSSSDVEKGISLAPESPHEKASVSGSVSLSKLFAPKIYRTSSLPVEEIGRVNTEFAFGGCLGASPYRSQGSIARTRSEPVDSQEKIIRKMDKFFRVVPSTPGAKEIKEWLKTSAKKDTENDGDNGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMRTRAIFISLPFSCVLGLVSAMTSTTMVRNKFIWLYASGQFLLVVIFAHIFYPLVGKQAVLAILLASFAGFGVMMSGSSIFGELLKWRRTFRAWERQQRSQMMMSEGLYSQGVITPQPSLPTYNQATVQHQNQLNSNS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07145 481 Pfam RING-variant domain 236 283 IPR011016 GO:0008270
Vivi2g07145 481 ProSiteProfiles Zinc finger RING-CH-type profile. 228 290 IPR011016 GO:0008270
Vivi2g07145 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 291 IPR013083 -
Vivi2g07145 481 SUPERFAMILY RING/U-box 232 287 - -
Vivi2g07145 481 CDD RING_CH-C4HC3_MARCH 236 284 - -
Vivi2g07145 481 SMART ringv_2 235 284 IPR011016 GO:0008270
Vivi2g07145 481 PANTHER OS02G0165000 PROTEIN 10 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07145 Vivi-Chr2 214333771 214337450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07145 224 290 C3H Transcription Factor Family AT2G37950 41.176 1.01e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07145 - - cam:101488558 715.301