Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07133 ATGATGTCTGATGAAGCTGTTTCTGTTCCTTCCAACCTCATCAGAACCAACTCAAACTCAAACCCTAATCCTCCTAACCCTAACAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCGGCTTCAGAAGTGATTGCTCTATCACCAAAGTCTCTGATGACGACAAACCGTTTCATCTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTGCAGCTACATCTGCGAGGGCACAATCTTCCATGGAAGCTTAAGCAAAGAAACCATCAGGAGGTTGTAAGGAAGAAGGTGTATGTTTGTCCGGAGAAAAGCTGTGTGCACCATGACCCTTGTAGAGCTTTAGGTGACTTGACCGGGATAAAGAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGACAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGAACTAGAGAGTACAGATGTGACTGTGGCACACTATTCTCCAGGAAGGACAGTTTCTTAACACATAGAGCCTTTTGTGAATCCTTGGTGGAAAGAAGTGCAAGAATAGGTTCAGCTCCAGCAGGTTTATCCAACTTTGGAAACAATCTTATGATCAACAACACTCAAGCTCAAGCACCAAGAATTCCTCATGGTTTATTTGGGCTTAATCAGGAGTTTGGTGGACCAGTTCCAGAAACATTCATGGGAAATTTTCTCAACAATAATCCTCCTCCTCATCATCATCAGATAAACATCCCTCATCAAAACTATCTTCCAAGCAACTCCACTACTACAACTAGTGTATTCTCATCATCAGAAGCAAACTCGGATCTAGAATTACTTCAGACAAATATGAATTCGTTCGGTTCAATACCGCATGGACAGTGGATGAATTATCGTTACAACGATCAACAAGAAGTATCTATGCCCATGCTTACTCAAGGAGTACTAAAGCTAGAACAAGAAGAAAACAACAAAATGAATGATTTGTCTCATTTGTATTATCAGAACCAATTACAAGGAGGTCCAAGTCACGTGTCGATGGAATCACAATCCACAGCTAGAAAGATGAACAATGGCAACAATTCTGCACCTCCCAACATTGTTGAAATTAAGAAACTGTTCAAGCAAGGAAACCATGCAGGAAACTTGAATGAAGATCAACTAAGCTTAACTAGAGATTTCCTTGGAGTTGGAGATGATTCATTGAAGAAATCCTTGTTGCAACAACAAGATGTCCCTAGGTTCAATCCAATAGGACCTGTCATGAACATGCAAAGTGATCAGTTTGGTGGACACTATTGA 1317 0.4093 MMSDEAVSVPSNLIRTNSNSNPNPPNPNKRKRSLPGTPDPASEVIALSPKSLMTTNRFICEVCNKGFKRDQNLQLHLRGHNLPWKLKQRNHQEVVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCESLVERSARIGSAPAGLSNFGNNLMINNTQAQAPRIPHGLFGLNQEFGGPVPETFMGNFLNNNPPPHHHQINIPHQNYLPSNSTTTTSVFSSSEANSDLELLQTNMNSFGSIPHGQWMNYRYNDQQEVSMPMLTQGVLKLEQEENNKMNDLSHLYYQNQLQGGPSHVSMESQSTARKMNNGNNSAPPNIVEIKKLFKQGNHAGNLNEDQLSLTRDFLGVGDDSLKKSLLQQQDVPRFNPIGPVMNMQSDQFGGHY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07133 438 MobiDBLite consensus disorder prediction 1 42 - -
Vivi2g07133 438 SMART c2h2final6 58 80 IPR013087 -
Vivi2g07133 438 SMART c2h2final6 100 130 IPR013087 -
Vivi2g07133 438 SMART c2h2final6 135 155 IPR013087 -
Vivi2g07133 438 MobiDBLite consensus disorder prediction 1 27 - -
Vivi2g07133 438 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vivi2g07133 438 FunFam protein indeterminate-domain 12-like 37 106 - -
Vivi2g07133 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 411 IPR031140 -
Vivi2g07133 438 Gene3D Classic Zinc Finger 37 109 - -
Vivi2g07133 438 Gene3D Classic Zinc Finger 114 192 - -
Vivi2g07133 438 Pfam Zinc-finger double-stranded RNA-binding 58 80 IPR022755 -
Vivi2g07133 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vivi2g07133 438 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Vivi2g07133 438 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07133 Vivi-Chr2 214084732 214087209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07133 29 209 IDZ Gene Family AT3G45260 81.215 1.37e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g07133 zf-C2H2_jaz 7.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07133 K25870 - gmx:100811687 422.165