Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07121 ATGGAGAATGACACAATTAGAAACACTCCTTCTAAATTTTCTCACTCTTCTTCACTTCCACCTCTTGCTTCTCAAATTGTGATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGGTGTGCTGAGAAATGTGTGTTGGCACCTTATTTTCCTCCCACTGAACCTGCCAAATTTACCACTGCTCATCGTGTGTTTGGTGCTAGCAACATCATCAAGTTCTTACAGGAACTACCGGAGTCTCAACGAGCCGATGCAGTGAGCAGCATGGTTTATGAGGCAAGTGCAAGAATAAGAGATCCAGTATATGGATGTGCTGGTGCAATTTGTCACCTCCAAAATCAAGTGAATGAGCTTCAAGCACAATTAGCCAAGTCACAAGTTGAACTTATGAACATGCAATTGCAACAATCCAATCTATTGGCCATGATTTGCATGGAAATGAATGAAACTCCACAAGAATCACCACAGCAATCAATAGACAACTTCATTTCAAGTCCTACTTATAGTAGTGATTATCAAAACAATCTCAACTTCTTTGAGGACAACACTAGCCCAAATTCATTGTGGGAGCCTCTTTGGACATGA 588 0.4099 MENDTIRNTPSKFSHSSSLPPLASQIVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQNQVNELQAQLAKSQVELMNMQLQQSNLLAMICMEMNETPQESPQQSIDNFISSPTYSSDYQNNLNFFEDNTSPNSLWEPLWT 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07121 195 Pfam Lateral organ boundaries (LOB) domain 30 126 IPR004883 -
Vivi2g07121 195 Coils Coil 116 136 - -
Vivi2g07121 195 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Vivi2g07121 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07121 Vivi-Chr2 213792187 213796888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07121 26 195 AS2 family AT2G28500 68.108 6.92e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g07121 LOB 1.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07121 - - gmx:100819336 311.227