Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07093 ATGGCTAGAGCAAATTCCACCCTTCCCATCTCTTTCTTCGAGATTATTCTTCAAACCAATCTTAAAACTATTAAAATACTGAATAAGTTTACAAGGAGTCACGGAGCTGGTCTACCAAATCCAGTGATGATGAAGCCTCCTGATGGCACTAAATGGAAAGTGTTTTGGAAAAATATCAATGGTGAGATTTGGTTTCAAAAGGGTTGGAATACTTTTACTAAAAACTACTCTCTACAATATGGTTGTTTGGTAGTGTTTAAGTATAAGGAAGGAAGTGTTGATGATGAATCAATTGAGATTTTGAATGAAAGACTTAATAAGAAGAAGGCTACACATAAGTTACCATTAGTTTCTCCTAGACGTCATAAAAAAGTTATAGGTGAGATTAAGGAGACTAGTGGAAGAACTACATCATTGAATTGTCCAAGAGAAAATAGTGCTCAAGAATCTTTTGTGCTACTTCATGTGTCACTGCTTCACGAGCCGCCTCACTTAGGAGCTAATTGTCTTAATGTTTCTGCCATTTCAGGGGTTAGTACTGGTGGACATGATGACCCTTCTCCATCTGCCATTCTCGGGACAAGTGTGTTGGAAGAGAATGTTGGTGATAAGGGGACCAATTATATGGAAGAGAATATGGGTGATGAGGGGACCAATGATATGGAAGAGAATATGGGTGATGAGGGGACTACTGAGATGGAAGTGAATTTGGGTGATGAAGAGACCACAGAGATGGAAGTGAATTTGGGTGATAAGTGGACCATTGAGGGAATAAACTGTAACCAAGAAGATATTGAGGAGTTCACTATAGCCAAGGAGATATGGAAATTAAGGGTCCTAATGAGGGACTAA 852 0.3897 MARANSTLPISFFEIILQTNLKTIKILNKFTRSHGAGLPNPVMMKPPDGTKWKVFWKNINGEIWFQKGWNTFTKNYSLQYGCLVVFKYKEGSVDDESIEILNERLNKKKATHKLPLVSPRRHKKVIGEIKETSGRTTSLNCPRENSAQESFVLLHVSLLHEPPHLGANCLNVSAISGVSTGGHDDPSPSAILGTSVLEENVGDKGTNYMEENMGDEGTNDMEENMGDEGTTEMEVNLGDEETTEMEVNLGDKWTIEGINCNQEDIEEFTIAKEIWKLRVLMRD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07093 283 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Vivi2g07093 283 SUPERFAMILY DNA-binding pseudobarrel domain 11 92 IPR015300 -
Vivi2g07093 283 Pfam B3 DNA binding domain 21 91 IPR003340 GO:0003677
Vivi2g07093 283 Gene3D - 6 102 IPR015300 -
Vivi2g07093 283 CDD B3_DNA 11 92 IPR003340 GO:0003677
Vivi2g07093 283 PANTHER B3 DOMAIN-CONTAINING 10 170 - -
Vivi2g07093 283 SMART B3_2 12 97 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07093 Vivi-Chr2 213273823 213280751 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07093 12 92 B3 DNA Binding Superfamily AT4G01580 32.530 4.36e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi2g07093 B3 4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07093 - - vvo:131651275 583.563