Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07088 ATGGAGGAGACACGAGAAGATGCAGGGCCGTCAGAACAAGGGTCATCTAATGTCAACGTATCATGGTGGCCTTCAGATTTTGTTGAAAAATTTGGATCTGTTGCTTTGGATTCTCAAGATGAGACAGTAATTAATAAAGAATCTTCTAGATACTCTGACAAAGATGTTTTGTCACCTCTGAAAGCATCACAAATTCTTTGGCGCACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAAGAACTTTTTGATAGTATTCCTACCTTGGACGAGCTTCATGCTTTGGACGGAGAGGGTTATAGAGCCGATATCATTCTCGTGGATTTAGAGAAAGATAAAAAACTATCCATGTTGAAGCAACTGATTGTGGCATTAGTTAAAGGATTAAACTCAAATCCAGCTGCAATAATTAAGAAGATAGCTGGATTGGTTTCTGATTTTTATAAGCGGCCCAGTGTGGAAAGTCCAGCAAAAGCCGCGTTCGATGAAACCTCTCACATTTTTGAGAATCGAGGTGTCCAGATGCTGGGGCAAATAAAGCATGGTTCATGTCGTCCTCGAGCTATCTTATTTAAAGTATTAGCTGATACTGTAGGTCTTGAAAGCAGACTCATGGTGGGCTTGCCAAATGACAGGGCTGTTGAATGTGTAGATTCATACAAGCATATGTCTGTTATAGTTGTATTAAATTCGACTGAAATGCTGGTTGACCTTATGCGATTTCCGGGTCAATTGTTACCAAAATCAATAAAGGCAGTTTTTATGAGTCATATATCCGCAGCAGGAGAGAGTGATTCTGCAGAAAACGATTCATGTGATTCGCCGTTAGAACCAAACAGTCCTTTATTTGGAGTTTCAGAGAGTACTGAGAAGGAGGAAAACCTTCAATTCTATAAAAGATTTGAAGCATCTTCAAATGTAACAGGCCTTTCCCTGAGAAATATGATGTTACGATCAAATAGCAGTTTGAGTTTGTCTCATAGTGAACCCAATATTACAACTTCATTTGGTCGGCGCAGTCGGAGAAAGGTTATTGCTGAGCAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGTGCACGGTCCATGCTTAGTGGCGATAGGACAGAATTTAGAGATTTTGCCGATGACCAGGCTACATCAAGATCCAGCTATAGATCAGATGGTGCATCCTCATCAGAAGTTCGTAGAATACGAAGACGAAGCATCAGCATTACGCCAGAGATTGGGGATGATATCGTAAGGGCCGTACGTGCAATGAATGAAACACTAAAGCAAAATCGTCTTATGAGAGAGCGAGTGGATGATAATTCATTGTCCCATTCTCCAAACAATATAGTTAGTGATGCAAATCTTCAGAAAAAAGTGTCAAATTTCCATCATGGTCATGATGAAAGGCCTAGCTTATATTCTTTTCAGCGTGACCAAGTAACATCACAAAAGGCAACGTCATTACCATCTTCACCACATGACTATAGAAGTCACGCTTCTGAGAGAAGTGAGCTATCAAGATATGGAGTTAATGATGAAACAGAGTCGACCTGGAATAAAGTACTTGAATCTCAAATGTACAATAACAAACCTTTATTGCCATATGAAGGATGGGATATTGACTTCTCAGAGTTAACTGTTGGAACTCGTGTAGGGATCGGCTTCTTTGGAGAAGTTTTTCGTGGCATATGGAATGGTACAGATGTTGCAATAAAGGTTTTTCTAGAGCAAGATTTAACCGCCGAAAACATGGAAGATTTCTGTAATGAAATATCTATTCTGAGTTATCTTATTTCTTGGTGCATGCACAAAGCCTCCACGTTTATCTATGGTTACGGAATATATGGAGATGGGATCATTGTATTACTTGATACATTTGAGTGGTCAGAAGAAAAAGCTCAGTTGGCGGAGACGACTAAAGATGATGCGTGA 1965 0.4005 MEETREDAGPSEQGSSNVNVSWWPSDFVEKFGSVALDSQDETVINKESSRYSDKDVLSPLKASQILWRTGMLSEPIPNGFYSVIPETRLKELFDSIPTLDELHALDGEGYRADIILVDLEKDKKLSMLKQLIVALVKGLNSNPAAIIKKIAGLVSDFYKRPSVESPAKAAFDETSHIFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDRAVECVDSYKHMSVIVVLNSTEMLVDLMRFPGQLLPKSIKAVFMSHISAAGESDSAENDSCDSPLEPNSPLFGVSESTEKEENLQFYKRFEASSNVTGLSLRNMMLRSNSSLSLSHSEPNITTSFGRRSRRKVIAEQRTASSSPEHPSFRARARSMLSGDRTEFRDFADDQATSRSSYRSDGASSSEVRRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLMRERVDDNSLSHSPNNIVSDANLQKKVSNFHHGHDERPSLYSFQRDQVTSQKATSLPSSPHDYRSHASERSELSRYGVNDETESTWNKVLESQMYNNKPLLPYEGWDIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSYLISWCMHKASTFIYGYGIYGDGIIVLLDTFEWSEEKAQLAETTKDDA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07088 654 MobiDBLite consensus disorder prediction 381 411 - -
Vivi2g07088 654 SUPERFAMILY Protein kinase-like (PK-like) 531 609 IPR011009 -
Vivi2g07088 654 MobiDBLite consensus disorder prediction 1 20 - -
Vivi2g07088 654 Pfam Ethylene-responsive protein kinase Le-CTR1 62 255 - -
Vivi2g07088 654 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 353 606 - -
Vivi2g07088 654 ProSitePatterns Protein kinases ATP-binding region signature. 562 583 IPR017441 GO:0005524
Vivi2g07088 654 MobiDBLite consensus disorder prediction 485 505 - -
Vivi2g07088 654 MobiDBLite consensus disorder prediction 331 351 - -
Vivi2g07088 654 ProSiteProfiles Protein kinase domain profile. 556 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g07088 654 MobiDBLite consensus disorder prediction 477 518 - -
Vivi2g07088 654 Gene3D Phosphorylase Kinase; domain 1 547 615 - -
Vivi2g07088 654 MobiDBLite consensus disorder prediction 331 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07088 Vivi-Chr2 213115407 213138199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07088 1 608 MAP Kinase Kinase Kinase AT3G58640 65.590 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vivi2g07088 EDR1 9.2e-55 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07088 - - aprc:113853840 1001.5