Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07073 ATGAGTAGCACTTCGACGCCTAAACGTAAAAAGTCATCATTATCAAGTGAGGGTGATGGTGGCAAAAGGCTAAAACGTAGCCGGTCGGTATTACCGGTGGAAGAAGCCGATCAAACAGGTAACGTGAAAGGAGGAGAAGAAGCTGATCGAAGAGATAACGCGGGAGGAGGAGAAGTTGCTCTAAAGAAAGGTCCGTGGACAAGGGAAGAGGATGAAATTTTGGTAGATCATATTAAGAAGTATGGAGAGGGAAAGTGGAAGGCCGTCCAGAAGAATTCAGGACTTGCTCGCGATGGGAAAAGTTATCGTCTACGATGGCCGAATTACTTGAGGCCAGGACTGAAAAGGGGTCCATTTAGTGCTGAAGAAAAACACAAAATCCTTGAGTTCCACTTTCTGAAGGGAAGCAAGTGGACTCAAATGGCTGCATTGTTGTCGGGACGTACATATAACGAGATAAAGAACTTTTGGAATGCAAGATATAGGAAACGACAACGAGCTGGCTTACCAATCTATCCTAACGAGATAACATCCAAATATTCGTTTAATGGCAGTCAAGAAAGTGCCGACACATTGGCAAATGAACCCAGCCAGCATGATGAAACAGAAAACTTCAACTTGTACATAACTGACTTGGACCTTAAATATTTCAAATTCCACCCAGATATGTTGCCGCCATATTTTGAGACACAAGATTACAAACCAATAAGTGACTTGGTTGGACGGTGCTCAGATTCGTCTCATAATACCTTACCCTTGCGTAGAGCAGCAGTAGTGCGGCGGAAATATTTGATCAGTAGCAGTAGTGTTGCTGTCCCGGAAGTATTTGATCAGTATGGAAAATATCCTATATTGTCTACTCTATGTGATCCGATTCTTAACACATGCATTCTTCATGGATATGATAATCCTATAACTGGTTTTCATGCCGCGTCAAATATCTCTTCTTCTGAGCCCATTAACGGGTCCATGAGTTTTAAGCTCCCTTCATTCCAAAACTCACAGACTCAACAGTGTACCAGGAGCGGCATGTATGTGCCGCCACTTACCTCATTTGAGTCTGCTGACACGCCGGTTCACGTTCCTCTGATTGAGCCTTGTCCATCCGTTCCAGTTTCTTTGGATTGTAGTCATTTAATTGATTCATCAGTATACTGCAATTCAGATCAAAATTTGCAAGGCGCAAGTATTGATTCATTGCAAGCAAATACTGATAGCCCGACTCCCAATGAAGCACACATTGGTACACAATGGAATGGAAGAAACTTCTTAAGATGGACCCGCCCCGAAATTGAAACCACTCAGAATTATGATATTTACGGCGGTGCATTTAATGATCAGCTTCCAGCTTATTGTTCTTTCGGCGAAGAAGATAATTTGAATCAGAAAGATTTGGCGCTACCAGATGCTGTGCTTGACTCTGGCTGGCATTGA 1434 0.4303 MSSTSTPKRKKSSLSSEGDGGKRLKRSRSVLPVEEADQTGNVKGGEEADRRDNAGGGEVALKKGPWTREEDEILVDHIKKYGEGKWKAVQKNSGLARDGKSYRLRWPNYLRPGLKRGPFSAEEKHKILEFHFLKGSKWTQMAALLSGRTYNEIKNFWNARYRKRQRAGLPIYPNEITSKYSFNGSQESADTLANEPSQHDETENFNLYITDLDLKYFKFHPDMLPPYFETQDYKPISDLVGRCSDSSHNTLPLRRAAVVRRKYLISSSSVAVPEVFDQYGKYPILSTLCDPILNTCILHGYDNPITGFHAASNISSSEPINGSMSFKLPSFQNSQTQQCTRSGMYVPPLTSFESADTPVHVPLIEPCPSVPVSLDCSHLIDSSVYCNSDQNLQGASIDSLQANTDSPTPNEAHIGTQWNGRNFLRWTRPEIETTQNYDIYGGAFNDQLPAYCSFGEEDNLNQKDLALPDAVLDSGWH 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07073 477 MobiDBLite consensus disorder prediction 40 63 - -
Vivi2g07073 477 SMART sant 62 112 IPR001005 -
Vivi2g07073 477 SMART sant 115 163 IPR001005 -
Vivi2g07073 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 165 IPR017930 -
Vivi2g07073 477 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 48 407 - -
Vivi2g07073 477 MobiDBLite consensus disorder prediction 12 32 - -
Vivi2g07073 477 Gene3D - 117 187 - -
Vivi2g07073 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 114 IPR017930 -
Vivi2g07073 477 MobiDBLite consensus disorder prediction 1 63 - -
Vivi2g07073 477 FunFam MYB-related transcription factor 62 115 - -
Vivi2g07073 477 Pfam Myb-like DNA-binding domain 66 126 - -
Vivi2g07073 477 SUPERFAMILY Homeodomain-like 61 157 IPR009057 -
Vivi2g07073 477 ProSiteProfiles Myb-like domain profile. 58 110 IPR001005 -
Vivi2g07073 477 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Vivi2g07073 477 CDD SANT 65 110 IPR001005 -
Vivi2g07073 477 Gene3D - 60 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07073 Vivi-Chr2 212855771 212857245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07073 60 366 MYB Transcription Factor Family AT5G06100 35.045 1.45e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g07073 Myb_DNA-bind_6 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07073 K09422 - psat:127085601 575.089