Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07054 ATGAATGAGTATGCTTCATCTTCTTCTCTGGTTTTGGATAGAGAAAGAGGAGAGCTTGTGGAAGCATCTGTCAAACTGGAACGCAAAGGTGTTTCACCTGAGAGAAGTATTGAAGCTTTGAAGAATCATAGTGAAGCTGAGAGGAGAAGAAGAGCAAGAATTAATTCTCATCTTGATACCCTTCGTACTGTTATTCCAGGTGCTAATAAGTTGGACAAAGCATCTTTACTAGCTGAAGTCATTACACATTTGAAAGAGCTAAAAACAAATGCAGCACAAGCAAGTGAAGGATTGATGATTCCAAAAGACAATGATGAGATAAGAGTTGAATCACAAGAAGGTGGATTAAATGGTTTCCCTTATTCAATTAGAGCATCACTATGTTGTGAATACAAACCAGGTTTACTGTCTGATATAAGACAAGCACTTGATGAACTTCATCTTATGATAATAAGGGCAGAGATTGCAACTTTAGGAGGTCGAATGAAGAATGTATTTGTCATAATTAGTTGCAAAGAACAGAATTTCGAAGATGCTGAGTATCGACAGTTTCTCGCTGGATCGGTTCATCAAGCTCTTAGATCTGTTCTTGATAGATTTTCTGTTTCACAAGATATCTTAGAAACTAGAAAGAGGAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTATAA 684 0.3655 MNEYASSSSLVLDRERGELVEASVKLERKGVSPERSIEALKNHSEAERRRRARINSHLDTLRTVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDELHLMIIRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILETRKRRRISIFSSSSLGDFL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07054 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Vivi2g07054 227 SUPERFAMILY ACT-like 126 203 IPR045865 -
Vivi2g07054 227 Gene3D - 34 96 IPR036638 GO:0046983
Vivi2g07054 227 PANTHER TRANSCRIPTION FACTOR BHLH30 6 219 IPR045847 GO:0003700|GO:0006355
Vivi2g07054 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 90 IPR036638 GO:0046983
Vivi2g07054 227 Pfam Helix-loop-helix DNA-binding domain 42 87 IPR011598 GO:0046983
Vivi2g07054 227 SMART finulus 44 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07054 Vivi-Chr2 212613403 212615352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07054 25 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.286 6.86e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g07054 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07054 - - lja:Lj3g3v2848980.1 384.8