Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07032 ATGAGTAGTTTCAATGATGATCCAAACCATGATGATCATGGTTTTAATCCATTTGGAAATTTTGATCATGGAACAAGTCAAAGCAACTTCAACAAAAAAATATTGTTAACCGCAATATGTTCTTTGATACTAGTATTGATTTTGGTCTTGGCTCTTCATCTCTATGCAAGGTATGTTCTCAAACGCCAAGCTCGCCGGAGGGCCGCCATTCATCAACTCAGCCTCACCGTCGCTCATGCTCATGTTCAATTCTCCGATCCATCAAACACCGGGCTCGATCCAACGCTCATCGCCACTCTTCCCACTTTCCTCTTCAAACAAAAGCAAATACAAGATGAAGAACAAAACAAAGATGTTTCTAATAATATTGTTGAATGTGCGGTGTGTTTGAGTTTGATAGAAGATGGAGAAATGATGAGGTTGCTTCCTAATTGTAAGCATAGTTTCCACGTGGCTTGTATCGATATGTGGTTAGCTTCGCATTCCACTTGTCCAATTTGTCGAACCAAGGTTGAACCGCGGCTTGAGCCAGAGACTCGCGAAGGTCCCATTTGGTTTAAACCATCATCGGAAAGTACTTCAGATGGTGGTGATTCTATTAGTGATTCCTCCAAAAATATTTCTCGATTAAGTTCTTTTCAGAGGATTCTTACTCGAGATAGATCTTCGAGAAGAATTCAACCTTCTAATAGTACTCGTGCTGATAATATTAATGATCGTGATTTAGAGAGGCAGTGA 738 0.4024 MSSFNDDPNHDDHGFNPFGNFDHGTSQSNFNKKILLTAICSLILVLILVLALHLYARYVLKRQARRRAAIHQLSLTVAHAHVQFSDPSNTGLDPTLIATLPTFLFKQKQIQDEEQNKDVSNNIVECAVCLSLIEDGEMMRLLPNCKHSFHVACIDMWLASHSTCPICRTKVEPRLEPETREGPIWFKPSSESTSDGGDSISDSSKNISRLSSFQRILTRDRSSRRIQPSNSTRADNINDRDLERQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07032 245 SUPERFAMILY RING/U-box 97 174 - -
Vivi2g07032 245 MobiDBLite consensus disorder prediction 178 245 - -
Vivi2g07032 245 FunFam E3 ubiquitin-protein ligase ATL6 80 174 - -
Vivi2g07032 245 Pfam Ring finger domain 125 168 IPR001841 -
Vivi2g07032 245 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Vivi2g07032 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 199 - -
Vivi2g07032 245 SMART ring_2 126 167 IPR001841 -
Vivi2g07032 245 CDD RING-H2_EL5-like 125 168 - -
Vivi2g07032 245 MobiDBLite consensus disorder prediction 186 235 - -
Vivi2g07032 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 174 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07032 Vivi-Chr2 212204130 212205257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07032 9 245 C3H Transcription Factor Family AT2G42360 43.083 4.81e-53 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07032 K19038 - qsa:O6P43_000799 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07032 2 212204130 212205257 Vivi2g07032 2 212204130 212205257 ECH