Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07011 ATGGACAATAGAGAAATAATTTCAAATGGTTTATTTCATGAAAACACAACAAGTTCATCAAATGATAATCTTCCTATTTTAAAGAGGAAGAGAAACCTCCCCGGAAATCCTGATCCTGAAGCTGAAGTGATATCTTTATCACCAAAAACATTGATGGCAACAAACAGATTTGTTTGTGAAATTTGTCTAAAGGGTTTTCAAAGGGATCAAAACCTTCAACTTCATCGACGCGGGCATAACCTTCCGTGGAAGCTGAAACAAAGGACAAACAAAGAAATAAGGAAGAGAGTGTATGTGTGTCCGGAGAAGACTTGTGTGCACAATCATCCTTCAAGGGCTTTAGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGTTTTATGCTGTTCAGTCGGATTGGAAAGCACACTCAAAGACTTGTGGTACCAGAGAATACAAATGTGACTGTGGCACTGTCTTTTCAAGGAGGGATAGTTTTGTGACTCACAGGGCATTCTGTGAAGCCTTAACAGAAGAAACAGCTAGAATAAACGGATCAACAAACTCATTACTAGCAATGGGAGGTTACAACAACATCATGCAAAATTCTCTTGTCCCAAATCATTTTTCTTCAATTTTCAAGCCAATTTCATGCACAGATCAAGCATCTAGATCAGGTCTATCCCTTTGGATGTCTCAATCATCTCCGGATGTCTTTCATGACAACAACAATTTGCATGAGATTCATCAACTTGAAAATTCATTACCACACTCTAATTATCATCCAAATTGGGTTTATGGAAACAAACTATCCTCCAATATTGGTTCCCAAGAGTTAACTAGCACTGTTTCACTTCCACTGGTCAATAGTAATAACATTGATAAGGATAGTGTAAGTGCAAGTGCAAACAATCTTGTTAGTGTTCCTTCCTTATATAGCTCACAACACCAACCTCAATCTCATATTCAAACATCCTCAGCAAACATGTCAGCAACAGCTTTGTTACAAAAAGCTTCTCAAATTGGAGCATCTTCAAGTGACTCATTGTTCCTTGGAGGTTTAGGACCTTTGGGATGCAATACTCCAAATCAAGATCATAGGAACAAATTTTGTGGGGTGTATAATTCAAACTCAGTACTCACAACAAGCCATGAGAGAGAAGGTAACTATTCAGGTGAATTGTCACAAATGCCCCCGACAAAACGGCGACGCATGCATAATGAAGAGAGTGTGTGGGGACAAACTAGGGATTTCCTTGGTGTTGGTGGTGCTAACCCTTTGCATCCTTTCATCAATCAACGGATGGACTTAATTTGA 1341 0.3915 MDNREIISNGLFHENTTSSSNDNLPILKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFVTHRAFCEALTEETARINGSTNSLLAMGGYNNIMQNSLVPNHFSSIFKPISCTDQASRSGLSLWMSQSSPDVFHDNNNLHEIHQLENSLPHSNYHPNWVYGNKLSSNIGSQELTSTVSLPLVNSNNIDKDSVSASANNLVSVPSLYSSQHQPQSHIQTSSANMSATALLQKASQIGASSSDSLFLGGLGPLGCNTPNQDHRNKFCGVYNSNSVLTTSHEREGNYSGELSQMPPTKRRRMHNEESVWGQTRDFLGVGGANPLHPFINQRMDLI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07011 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vivi2g07011 446 FunFam protein indeterminate-domain 12-like 36 104 - -
Vivi2g07011 446 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vivi2g07011 446 MobiDBLite consensus disorder prediction 1 38 - -
Vivi2g07011 446 MobiDBLite consensus disorder prediction 9 26 - -
Vivi2g07011 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 433 IPR031140 -
Vivi2g07011 446 MobiDBLite consensus disorder prediction 392 411 - -
Vivi2g07011 446 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Vivi2g07011 446 Gene3D Classic Zinc Finger 90 181 - -
Vivi2g07011 446 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07011 Vivi-Chr2 211964779 211967366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07011 23 430 IDZ Gene Family AT1G03840 48.637 1.27e-128 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g07011 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07011 K25870 - gmx:100778666 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07011 2 211964779 211967366 Vivi2g07011 2 211964779 211967366 ECH