Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07008 ATGTCGAACCCATTGTTCCTCGTACTCCTGTTTCTGTTTTCTCTCTCACTATTTTCTTCTTCCACTTTCTCTCTCAACCAAGACGGTCTCTTTCTCCTTGAAGCTAAACTCCACCTCTCCGACCCTTCAAATTCCCTCTCCACCTGGAACCACCGCGACCCCACTCCCTGCAACTGGACCGGCATCCATTGCAACAACCTCACCTCCGCCGTCACCTCCATCAACCTCCCTGACTCCAACCTCTCCGGCCCCTTCCCCACTTCCCTCTGCCGCCTCTCTTCTCTCTCCTACCTCTCCCTCCCCAACAACAACCTCAACTCCACCCTCCCTTCCACTATCTCCGCCTGCACCACCCTCCGCCATCTCAACCTCTCCCTCAACCTCCTCTCCGGTCAACTCCCCTCCACTCTCTCCACTCTCCCCTTCCTCCAAACCCTCGACCTCTCCTTCAACAACTTCTCCGGCAACATCCCTCAATCCTTCGCCAACTTTCAACAACTCCAAACTCTCATCCTCGTCAACAACCTCTTCACCGACACAATCCCTTCCTCTCTAAGCAACATCTCATCTCTCAAACAGCTTCACCTCGCTTACAACACCTTCCTCTCTGAAGCTCCGATCCCAACCGAATTCGGAAGCCTCGTCAACCTTGAAAATCTATGGCTCTCCGGTTGCAACCTTATCGGTCCCATTCCCGTTTCTCTCCGTAAACTCGTTAACCTCAAGAACCTAGACTTGTCGCAGAACATGCTCAACGGAACCATACCGGAAACTGTGATATCCGGATTAACCAGCATTGTTCAAATCGAGCTTTATCAAAACTCTTTCTCCGGCGAGTTGCCGCGTGTCGGTGTATCCAACTTGACTCGGTTGGAACGTTTCGATGCTTCGGAAAATTACCTGACTGGGACGATTCCCGGTGAGTTGTGTCGTTTGAAGAAACTCGGGTCTCTTAATCTGTACAATAATCAACTCGAGGGTTCTCTGCCGGAGAGTTTAGCTTCGTCGGAGAGTCTATACATGCTTGTTTTGTTCAACAACTCACTCTCTGGGAATCTACCAACTGGTTTGGGGAGCAAGTCGAGGTTACAGATGCTTGATGTTTCGTTTAATCAATTTTCCGGTAACATTCCGGCGAGTCTGTGCTCTCAGGGAACGTTGCAGGAGCTGTTGATGATTTACAATTCGTTTTCCGGGGAAATTCCGGAGAGTCTTGGAAACTGTTTGAGCTTAACAAGGGTTAGGCTTGGGAACAATAACCTCTCTGGTGTTGTTCCTTCTGGTTTTTGGGGTTTGCCCCGGAATAGGTTTAACGGGTCGATTCCCGAGTCAATCGGGTCATTGAATAATCTCGGAGTGTTTGTTGCTAGCGGTAATAGTCTTACCGGTCGGATTCCGAGCAGTATGGTTAAGTTAAGCCAATTGGGCAGGCTTGTTCTTAGGGATAATCAGTTTTCTGGAGAGATTCCTCATGGAGTTGGTGATTGGAAGCAGCTCAATGAGCTTGATTTAGCGAATAATAGGTTTGTTGGTGATATTCCAAGTGAATTAGGAACCTTGCCGGGGCTTAATTTTCTTGATCTTTCTGGTAATCTTCTTTCTGGTGAAATTCCAATGGAGCTGCAAAATTTGAAGCTTAATTTTTTAAACCTGTCGAATAACCAGTTATCAGGGGAAATTCCACCTCTTTATGCTAATGAGTATTTTAAGGACAGTTTTGTAGGAAATCCTGGTCTATGCGGCGATATCTCTGGATTGTGTCCGATTTCGGGCGAGAAGAGTAAGAATAAGAACTTTGTGTGGGTTTTCAGGTTCATATTTGTACTTGCTGGTGTTGTGTTAGTTGTCGGGGTGGCTTGGTTTTACTTCAAATTCTGGAATTTCAAGAAGACGAAGAAAGGATTTCATTTGTCGAAATGGAGGTCGTTTCATAAAATAGCGTTTAGTAAGTTTGAGATTGTGAAACTGATGAGTGAAGATAACGTGATAGGGAGTGGATCTTCCGGGAAGGTATACAAAGTGGTGCTGAGTAACGGAGAGACAGTTGCGGTGAAGAAATTATGGGGAGCAAAGAAGACGAAAAATGGAAATGTTGATGATCATGAAAAGGATGGATTTGAAGTCGAAGTTGACACATTGGGAAAGATTAGGCACAAGAATATTGTAAGGTTATGGTGTTGTTATAACAATGGTGATAGTAAGCTTCTGGTTTACGAGTACATGCCAAATGGAAGCATTGCTGATTTTTTGCATAGTAGCAAGAAAAACTTGTTGGATTGGCCAACTAGACTTAAAATCGCTATCGATGCAGCTGAAGGACTCTCTTATTTGCATCATGATTGTGTAGTTCCTATTGTTCACAGAGATGTAAAATCTAGTAACATTTTGCTAGATGAAGAATTTGGTGCAAAAATTGCTGATTTTGGAGTTGCGAAATTTGTTAGAGGTGTTGGCAATGGCACAGAAGAACCCATGTCTATGATTGCAGGATCTTATGGTTACATTGCACCAGAATATGCGTATACTCTTAGGGTGAATGAAAAGAGTGACATTTATAGTTTTGGTGTAGTGATTTTGGAGTTGGTAACTGGAAAACAAGCTATTGATCAAGAGTATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCGAAATTGAACGAGGAAGAACTGGATCAAGTGATTGATCGAACTCTTGATTATTCGAAATACAAAGAAGAAATAAACAAAGTACTCAAGTTGGGAATTGTTTGCACAAGCTCTCTTCCTATAAACCGTCCTTCGATGAGAAGTGTGGTGAAAATGCTGCATGAAGTAACATCAGGTTCCAAATCCAGAAGTGGAAGATTCTCTCCTTACTATCAAGAAATAGTCTCTGATAATGATCATTCGGAATCATAA 2898 0.4396 MSNPLFLVLLFLFSLSLFSSSTFSLNQDGLFLLEAKLHLSDPSNSLSTWNHRDPTPCNWTGIHCNNLTSAVTSINLPDSNLSGPFPTSLCRLSSLSYLSLPNNNLNSTLPSTISACTTLRHLNLSLNLLSGQLPSTLSTLPFLQTLDLSFNNFSGNIPQSFANFQQLQTLILVNNLFTDTIPSSLSNISSLKQLHLAYNTFLSEAPIPTEFGSLVNLENLWLSGCNLIGPIPVSLRKLVNLKNLDLSQNMLNGTIPETVISGLTSIVQIELYQNSFSGELPRVGVSNLTRLERFDASENYLTGTIPGELCRLKKLGSLNLYNNQLEGSLPESLASSESLYMLVLFNNSLSGNLPTGLGSKSRLQMLDVSFNQFSGNIPASLCSQGTLQELLMIYNSFSGEIPESLGNCLSLTRVRLGNNNLSGVVPSGFWGLPRNRFNGSIPESIGSLNNLGVFVASGNSLTGRIPSSMVKLSQLGRLVLRDNQFSGEIPHGVGDWKQLNELDLANNRFVGDIPSELGTLPGLNFLDLSGNLLSGEIPMELQNLKLNFLNLSNNQLSGEIPPLYANEYFKDSFVGNPGLCGDISGLCPISGEKSKNKNFVWVFRFIFVLAGVVLVVGVAWFYFKFWNFKKTKKGFHLSKWRSFHKIAFSKFEIVKLMSEDNVIGSGSSGKVYKVVLSNGETVAVKKLWGAKKTKNGNVDDHEKDGFEVEVDTLGKIRHKNIVRLWCCYNNGDSKLLVYEYMPNGSIADFLHSSKKNLLDWPTRLKIAIDAAEGLSYLHHDCVVPIVHRDVKSSNILLDEEFGAKIADFGVAKFVRGVGNGTEEPMSMIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKQAIDQEYGEKDLVKWVSSKLNEEELDQVIDRTLDYSKYKEEINKVLKLGIVCTSSLPINRPSMRSVVKMLHEVTSGSKSRSGRFSPYYQEIVSDNDHSES 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07008 965 ProSiteProfiles Protein kinase domain profile. 657 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g07008 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 741 949 - -
Vivi2g07008 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 430 591 - -
Vivi2g07008 965 ProSitePatterns Protein kinases ATP-binding region signature. 663 686 IPR017441 GO:0005524
Vivi2g07008 965 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 25 188 - -
Vivi2g07008 965 SUPERFAMILY Protein kinase-like (PK-like) 656 935 IPR011009 -
Vivi2g07008 965 Gene3D Transferase(Phosphotransferase) domain 1 741 954 - -
Vivi2g07008 965 SMART LRR_typ_2 312 335 IPR003591 -
Vivi2g07008 965 SMART LRR_typ_2 140 163 IPR003591 -
Vivi2g07008 965 SMART LRR_typ_2 408 431 IPR003591 -
Vivi2g07008 965 SMART LRR_typ_2 472 496 IPR003591 -
Vivi2g07008 965 SMART LRR_typ_2 238 262 IPR003591 -
Vivi2g07008 965 SMART LRR_typ_2 92 116 IPR003591 -
Vivi2g07008 965 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 203 429 - -
Vivi2g07008 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672|GO:0006468
Vivi2g07008 965 SUPERFAMILY L domain-like 354 570 - -
Vivi2g07008 965 FunFam Receptor-like protein kinase HSL1 640 740 - -
Vivi2g07008 965 Gene3D Ribonuclease Inhibitor 24 204 IPR032675 -
Vivi2g07008 965 ProSiteProfiles Leucine-rich repeat profile. 545 567 IPR001611 GO:0005515
Vivi2g07008 965 Gene3D Phosphorylase Kinase; domain 1 640 740 - -
Vivi2g07008 965 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vivi2g07008 965 SUPERFAMILY RNI-like 73 428 - -
Vivi2g07008 965 Gene3D Ribonuclease Inhibitor 205 259 IPR032675 -
Vivi2g07008 965 Pfam Protein kinase domain 659 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g07008 965 Gene3D Ribonuclease Inhibitor 260 597 IPR032675 -
Vivi2g07008 965 SMART serkin_6 657 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g07008 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 191 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07008 Vivi-Chr2 211933214 211936652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07008 21 959 Receptor kinase-like Gene Family AT1G28440 55.972 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi2g07008 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07008 - - gmx:100778128 1172.15