Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g07003 ATGCTAGCTGTATCACCATTGATGAACACAAGAGATGAGAGCCAAAGAGAGATGGAGGAGAGTTTATCAATTGAAACATGTGATTTTGCTGATCTTTCCGAAGGGACTTTATTGGAAAGCATCAACTTTGAATTCGACGATGATTTCTTCGTGTGCTTCGACGAAGGAGACGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAGTTTTCACTCAGCGGGGGCGAGGAATCGGAGATGAATTCATCGATAACGGTGGTGGATAATAACAAGTTTTGTGATGATCATAATGATGGGAATAATATAGTTAGTGTTGAGAAAAAATTGCAAGAGGAAGAGAAACAAGGATCTTCTTCGGATTCGGGTTCGAGCCGTGGGGAGGAAATTGTTAGTAGAAGAGATGAATCTGTGGTGGTGAATCCTTTGCCTAAGGAAAATGAAAAAGGAAGAAAATCATCATCTTCTTCTCAAAAGAATAATCATCAAGGAAAGAGAAAAGTGAAGGTGGATTGGACACCAGAATTGCACAGAAGATTTGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTAGAAATCATGGGAATCGACTGCCTTACTCGCCACAACATCGCGAGCCACCTTCAAAAATATCGATCTCATAGGAAGCATTTGCTTGCGCGTGAAGCGGAAGCTGCGAGCTGGACTCAGCGGAGGCAATTGTCTTGTAAGAGAGATGTGAACCATTGGGTGGCACCAACTATGGGTTTTCCTCCGATGACACCACCGGTGCATCATTTTAGACCTTTACATGTGTGGGGGCACCATCACATGGATCAGTCCTTTATGCATATGTGGCCTAATTATTCGCCGCACCATCCATCGCCTAATTGGGCGCCTCCAAGGCCGGCTCCGCCTCCTAACCCTTCGTATTGGCACCAACGAGCTCAAAACACACCAACCGCAGGAACACCGTGCTTTCCACAGCCTCTGACAACAACGAGATTTGCCTCTCCAACTGTTCCGGGCATTCCTCCACCGCATGCAATGTACCAAGTAGATCCCGGCATGACCGTCCCCGCTGCTCAACCGTCTCCTCCGCCACACTTAGACTTCCATCCGTCAAAGGAGAGCATAGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGTCTTAAAGCTCCTGCACTTGAAGGTGTGATGGGTGAGTTACAGAGACAAGGAATTCCAAAAATTCCACCCTCTTGTGCTTGA 1275 0.4612 MLAVSPLMNTRDESQREMEESLSIETCDFADLSEGTLLESINFEFDDDFFVCFDEGDVLPDLEMDPEMLAEFSLSGGEESEMNSSITVVDNNKFCDDHNDGNNIVSVEKKLQEEEKQGSSSDSGSSRGEEIVSRRDESVVVNPLPKENEKGRKSSSSSQKNNHQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWTQRRQLSCKRDVNHWVAPTMGFPPMTPPVHHFRPLHVWGHHHMDQSFMHMWPNYSPHHPSPNWAPPRPAPPPNPSYWHQRAQNTPTAGTPCFPQPLTTTRFASPTVPGIPPPHAMYQVDPGMTVPAAQPSPPPHLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQRQGIPKIPPSCA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g07003 424 Gene3D - 165 226 - -
Vivi2g07003 424 MobiDBLite consensus disorder prediction 312 329 - -
Vivi2g07003 424 FunFam Two-component response regulator 164 227 - -
Vivi2g07003 424 Pfam Myb-like DNA-binding domain 171 220 IPR001005 -
Vivi2g07003 424 SUPERFAMILY Homeodomain-like 166 225 IPR009057 -
Vivi2g07003 424 MobiDBLite consensus disorder prediction 294 329 - -
Vivi2g07003 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Vivi2g07003 424 MobiDBLite consensus disorder prediction 128 156 - -
Vivi2g07003 424 MobiDBLite consensus disorder prediction 111 171 - -
Vivi2g07003 424 MobiDBLite consensus disorder prediction 294 311 - -
Vivi2g07003 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 224 IPR017930 -
Vivi2g07003 424 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 423 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g07003 Vivi-Chr2 211840941 211844817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g07003 1 330 G2-like Transcription Factor Family AT5G44190 40.111 9.15e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi2g07003 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g07003 - - gmx:100775671 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07003 2 211840941 211844817 Vivi2g07003 2 211840941 211844817 ECH
Vivi5g03339 5 124459813 124462169 Vivi2g07003 2 211840941 211844817 PCT