Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06988 ATGAGTACTATTTGTGATGAACATGCACAACAAAACCACAAGTTTCTTTCTTCTTACCAACCTCTCTCCCCCAAAAAGCCTCTCAGAGAAATCGATATCCCTCCGAGAAAACTCCTCACCCGCCGCACCACCGCCGCTGACATGTTCTCCGATGACACCATCCTTCAAAAATATCTCCCTCACAATGACTCCGACTCGGACTCCGATGATCCTTACTCCTCCGATCATTTCCGCATGTACGAATTCAAAGTCCGGCGATGCACTCGTAGCCGGAGTCACGACTGGACTGACTGTCCATTCGCACACCCTGGGGAGAAAGCACGCCGCCGTGATCCACGGCGGTTTCATTACTCCGGGAATGTTTGCCCTGAGTATCGCCGCGGTGGCTGTGACCGCGGTGATTCCTGTGAGTTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGGTATAGAACAGAAGCTTGCAAAGATGGGAAAAACTGTAAGAGAAAGGTTTGTTTTTTCGCACACACTCCTCGTCAGTTAAGAATCCTTCCGGTAACTTCTTCCCCATCTTCAAACTCAAATGAACAATTTTCTCCATGCAACAAGAAAAATAACAAGCTTTTGAATAACCATGTTGCATCAAAATCAAACCATTGTTGTTTGTTTTGTCACTGTGGCGGTAATGGTAATGGTAATGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTCTCACCGCCGGCATCTCCTCCTGTGTCTCCGATGAAGCCTAGAAATGATGTTTCATCTCTATCACGCTATGGTTCGTCCATTGATGGTAATAATATTCGTTACCGAGACATGCTTATTGATCTTTTGGGTTCTTTTGAGGGATTAAATTTCAATGACGGTTCATCTTCTTCTTCCCCGGTTTCTGGTTTACAGAACCAGAACAACCTGGGTTATTTTGATGTTCCTGTTAACTCCGAGGAACAGCTTCAGAAGCAGTTTATTGTTTCACCTTCTTTTGATCAGCAACAACAGCATTTCAATATTCTTTCACCTTCGATTCGACAGAATTCGACCTCCATTACTTTCAACGATGTTGACAATACCATGAACAACAACAACATGATGTTTTTGGGAGATAATGAAAATAATAAGGTTCTTGTCGGTGGTGATGTTCCTGATCTTGGTTGGGTTAATGATCTTCTGATGTAG 1200 0.4358 MSTICDEHAQQNHKFLSSYQPLSPKKPLREIDIPPRKLLTRRTTAADMFSDDTILQKYLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGNVCPEYRRGGCDRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSPSSNSNEQFSPCNKKNNKLLNNHVASKSNHCCLFCHCGGNGNGNANNSPTSTLFGMSHFSPPASPPVSPMKPRNDVSSLSRYGSSIDGNNIRYRDMLIDLLGSFEGLNFNDGSSSSSPVSGLQNQNNLGYFDVPVNSEEQLQKQFIVSPSFDQQQQHFNILSPSIRQNSTSITFNDVDNTMNNNNMMFLGDNENNKVLVGGDVPDLGWVNDLLM 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06988 399 Gene3D - 117 180 - -
Vivi2g06988 399 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Vivi2g06988 399 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
Vivi2g06988 399 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Vivi2g06988 399 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Vivi2g06988 399 PANTHER UNKEMPT FAMILY MEMBER 50 398 IPR045234 -
Vivi2g06988 399 Pfam CCCH-type zinc finger 121 141 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06988 Vivi-Chr2 211425954 211427511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06988 72 349 C2H2 Transcription Factor Family AT5G12850 38.356 2.51e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi2g06988 zf-CCCH 5.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06988 K23047 - gmx:100801371 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06988 2 211425954 211427511 Vivi2g06988 2 211425954 211427511 ECH