Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06987 ATGCCAGCCCAGAAGCATGCCTTACCCGAGTCAATGGACGAAGAAGAAACTTCACAGCATCTTCACTATTCTCGCCATGTCAAGCATCAACCGAACAACCGCGACCCAAACTTCATCGACCAACAGCATCAACTCGAACAAGAAGAAGATGAAGAAGACGATGATGATCAGCAAGAGCAGGACGAGGAGGAGGAGGAGCAAGGTGAAGAAGATGAAGATGAAGAAGAGGCTGAGGAAGATGATGAAGATGAAGACGAAGATGAAGGGCAGCACCATGAAGACGATAAGGAGAAATCACAGGATTCCGACGAAGCCCCATCTTCTGACTCTGAAGAAAAGCCTCCATATGTGTACGTTGAACTTTCGGATATTCGTAAAGATGTCCAATGTCCAATTTGTCTTGGTATTATCAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGCTTTTGCAGGGAATGCATTGACAAATCAATGCGACTGGGAAACAATGAATGTCCTGCTTGCCGCACTCACTGTGCCAGCCGTCGCTCTTTGCGAGATGATCCAAACTATGATGCTCTTATTGCTATGTTATATCCAAATATCGAGAAGTATGAGGAAGAGGAGCTTGAGTTTCGTGAGGAAGAAAAGAACCGAAATAAGCAGATTCAAGCTTCAATAGCAAAAGTATTTCAGCGGCAATCTGAAGCACTAACTAAGAGACGCAAAGATAATACACCAAGTTCATTTGTGACAAGATCGCAGCGAAATCAAAGAAACCTTCAGTCTAGGAGACAAACTCAAGCTGCTGATATTCAAGGATCTGAAGAGAATGAGGAGGAAAATGGCAACAATGAAAAGGACTCATCTTCAGGTGACGAGCGGGGTACAGAACTCCGACAGAGAAAACGAAAGAGATGGACCAGAGTTCGCTCCTCTCAGCCCTCTTCATCAATGGCAAGTCCTGATGGCGGAAGTGTAGAAAGTGATATGGATATAACTAGAGAAAATCGAGGAATTTCAAGACAGGTGTCAAAACCTAGGAAGCTTACTTGGGGAAGAGGTGGTTTTAGAAGTAACACAAGACATGGCAGTGGTGGTGGTAGCAACAGCAAAAACTCTCGCACCGGCCGAATGTCTAGATTGGTTGATTATCTCAAAAGCTTGAATGAAAACACTGATGAGTTTGAGGTTCATCTCATGTTTGTTTCTCCGGACAAAGAAGCTCCTACACCAAGTTTGGAGCAGCTTCACCTATGCTGTCGACCAACTTTGTCTGTCAAGAACCTTCATGAATATGTTGCTAGTCAGACACCTTTGACAGTTGAGGAAGTTGAGATACTGGCAGTTAAAGGATGCAGCAGTATAAACCTTGACAAGTCGGCTGATGAGAAATCAGTTGCGGAATGTGATGAGCTAACATCGCTGGTTATCGATCCACAAAAAGATGAATTGGAACTTCTGCAAGCTCATGAAACTGTGGCAGAGATTAGATCCAAATCTATATCTAAAAGGGGACATTTGATTCTGGCATATAAGAGGAAGGTGTAG 1533 0.4377 MPAQKHALPESMDEEETSQHLHYSRHVKHQPNNRDPNFIDQQHQLEQEEDEEDDDDQQEQDEEEEEQGEEDEDEEEAEEDDEDEDEDEGQHHEDDKEKSQDSDEAPSSDSEEKPPYVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAMLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFQRQSEALTKRRKDNTPSSFVTRSQRNQRNLQSRRQTQAADIQGSEENEEENGNNEKDSSSGDERGTELRQRKRKRWTRVRSSQPSSSMASPDGGSVESDMDITRENRGISRQVSKPRKLTWGRGGFRSNTRHGSGGGSNSKNSRTGRMSRLVDYLKSLNENTDEFEVHLMFVSPDKEAPTPSLEQLHLCCRPTLSVKNLHEYVASQTPLTVEEVEILAVKGCSSINLDKSADEKSVAECDELTSLVIDPQKDELELLQAHETVAEIRSKSISKRGHLILAYKRKV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06987 510 MobiDBLite consensus disorder prediction 323 337 - -
Vivi2g06987 510 Coils Coil 45 80 - -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 91 115 - -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 8 33 - -
Vivi2g06987 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 200 IPR013083 -
Vivi2g06987 510 PANTHER OS11G0578200 PROTEIN 44 509 IPR044592 -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 45 90 - -
Vivi2g06987 510 Coils Coil 196 219 - -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 356 372 - -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 278 295 - -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 1 115 - -
Vivi2g06987 510 ProSiteProfiles Zinc finger RING-type profile. 130 170 IPR001841 -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 228 372 - -
Vivi2g06987 510 SUPERFAMILY RING/U-box 113 184 - -
Vivi2g06987 510 MobiDBLite consensus disorder prediction 242 267 - -
Vivi2g06987 510 CDD RING-HC_RING1-like 127 192 - -
Vivi2g06987 510 SMART ring_2 130 169 IPR001841 -
Vivi2g06987 510 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
Vivi2g06987 510 Pfam Zinc finger, C3HC4 type (RING finger) 129 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06987 Vivi-Chr2 211404530 211409022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06987 128 299 C3H Transcription Factor Family AT2G30580 27.419 3.58e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06987 K10695 - gmx:100776547 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06987 2 211404530 211409022 Vivi2g06987 2 211404530 211409022 ECH