Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06984 ATGGATCCCTATCAACAAGCTGGTCAACCTTCTTCTTCAACAAAAGTCGAAAGAAAAATAATAGAGAAAAATAGGAGAAATAAGATGAAGAATCTTCATTCCAAACTCAACTCTCTTCTTCCTAACTATAATCCCAAGGAAACCTTACCACTAATTGATCAAGTTGACGATGCTATAAACTACATAAAGAGCTTAGAGACAAATTTGAAATTGGCGAAGGAGAAGAAAGAAAGATTAATGAGAAGCAAGAGATCGCGTAGTGGCTGTTTGAGTTCTTCTGGAGCAAAAGGAAGCGTAAAATCACCAAAAATAGAGATTGATGAAAATGGTTCTTCTCTACAAGTTATTGTAACATGTGGGGTTGATGAACAGTTCATTTTCTATGAAATTCTAAGAATACTACAGGAAGACCACGTGGAGGTCATCTCAGCAAATTCTTCATCGATAGGAGATTCAGTTATACATGTTGTGCATGCAGAGATTCTGCAATCATTGCTTCAATTTGGAGCGACCAATATAGGTGAAAGATTGAAAAAGCTTGTGAATGGATCTACGAGAGTGGTGCAATTAACAGAGCCTCAGTTGTGGGATTTTGAGATTAGAAATGAGAATTGGGATTTAAATTCTATAGTAAACCAGTGTTTACCGAATTCTTGA 657 0.3623 MDPYQQAGQPSSSTKVERKIIEKNRRNKMKNLHSKLNSLLPNYNPKETLPLIDQVDDAINYIKSLETNLKLAKEKKERLMRSKRSRSGCLSSSGAKGSVKSPKIEIDENGSSLQVIVTCGVDEQFIFYEILRILQEDHVEVISANSSSIGDSVIHVVHAEILQSLLQFGATNIGERLKKLVNGSTRVVQLTEPQLWDFEIRNENWDLNSIVNQCLPNS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06984 218 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Vivi2g06984 218 FunFam Transcription factor bHLH162 6 91 - -
Vivi2g06984 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Vivi2g06984 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 181 - -
Vivi2g06984 218 MobiDBLite consensus disorder prediction 76 103 - -
Vivi2g06984 218 Coils Coil 55 82 - -
Vivi2g06984 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 86 IPR036638 GO:0046983
Vivi2g06984 218 Gene3D - 7 91 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06984 Vivi-Chr2 211291059 211292944 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06984 1 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.824 3.50e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g06984 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06984 - - vvo:131653771 277.715