Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06982 ATGGATCCCTATCAACAAGCCGGCCAACCTTCTTCAACAAAAGTGAAAAGAAAAATTGTTGAAAAAAATAGGAGAAATAAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTTCTTCCTAACTATAATCCCAAGGAAGCCTTACCACTAGTTGATCAAGTAGATGATGCTATAAACTATATTAAGAGTTTAGAGACAAATTTGAAATTGGCGAAGGAGAAGAAAGAAAGTTTAATGAGAAGCAAGAGATCGCGTAGTGGTTGTTCGAGTTCTTCTGGAGTAAAAGGAAGCATAAAATCACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTGTAACATGTGGGGTTGATGATAAGTTCATTTTCTATGAAATTCTAAGAATACTGCAGGAAGATCACGTGGAGGTCATCTCAGCAAATTCTTCTTCGATAGGAGATTCAGTTATACATGTTGTGCATGCAGAGGTATAA 483 0.3561 MDPYQQAGQPSSTKVKRKIVEKNRRNKMKSLYSKLNSLLPNYNPKEALPLVDQVDDAINYIKSLETNLKLAKEKKESLMRSKRSRSGCSSSSGVKGSIKSPKIEIHENGSSLQVIVTCGVDDKFIFYEILRILQEDHVEVISANSSSIGDSVIHVVHAEV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06982 160 FunFam Transcription factor bHLH162 6 90 - -
Vivi2g06982 160 Coils Coil 54 81 - -
Vivi2g06982 160 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Vivi2g06982 160 MobiDBLite consensus disorder prediction 83 97 - -
Vivi2g06982 160 Pfam Helix-loop-helix DNA-binding domain 14 65 IPR011598 GO:0046983
Vivi2g06982 160 Gene3D - 5 90 IPR036638 GO:0046983
Vivi2g06982 160 SMART finulus 18 70 IPR011598 GO:0046983
Vivi2g06982 160 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 159 - -
Vivi2g06982 160 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 83 IPR036638 GO:0046983
Vivi2g06982 160 MobiDBLite consensus disorder prediction 1 24 - -
Vivi2g06982 160 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06982 Vivi-Chr2 211213591 211214530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06982 1 160 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.012 3.18e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g06982 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06982 - - vvo:131653771 285.419