Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06973 ATGGAGTCTAATCAACAAAAAGGTCAACCTTCTCCTTCAACAAAAGTTGAAAGAAAGATTGTTGAGAAAAATAGGAGAAATAAGATGAAGAGTCTCTATTCCAAACTCAACTCTCTTCTTCCTAACTATAATCCCAAGGAACATTTACCATTACCTGATCAAATAGACAATGCTATAAACTATATAAAGAGCTTGAAGACAAATTTGAAATTGGCTAAGGAGAAGAAACAAAGTTTAATAAGAAACAAAAGATCGCTTAGTGGCTGTTCGAATTCTTCTGGAGCAAAAGTAAGCATAAAATCACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATGGTAACATGTGGGGTTGATGAACAGTTCATTTTCTATGAAATTATAAGAATACTGCATGAAGATCACGTGGAGGTCATCTCTGCAAATTCTTCACTGGCTGGAGATTCGGTTATTCATGTCGTGCATGCAGAGAATCCGCAATCATTGTTTCAATTTGGAGCGAGCAAAGTGGGCGAGAGATTGAAAAGGTTTGTGAATGGATCTATGGGCGAGGCACAATTAATAGTGCCTCAATTGTGGGATTTTGAGATTGGAACTGAGACTTGGGATCTAAATTCTATAGTAAACAAGTGTTTGTCAAATTCTTAA 657 0.3577 MESNQQKGQPSPSTKVERKIVEKNRRNKMKSLYSKLNSLLPNYNPKEHLPLPDQIDNAINYIKSLKTNLKLAKEKKQSLIRNKRSLSGCSNSSGAKVSIKSPKIEIHENGSSLQVMVTCGVDEQFIFYEIIRILHEDHVEVISANSSLAGDSVIHVVHAENPQSLFQFGASKVGERLKRFVNGSMGEAQLIVPQLWDFEIGTETWDLNSIVNKCLSNS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06973 218 SMART finulus 19 71 IPR011598 GO:0046983
Vivi2g06973 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 91 IPR036638 GO:0046983
Vivi2g06973 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 181 - -
Vivi2g06973 218 FunFam Transcription factor bHLH162 6 91 - -
Vivi2g06973 218 Gene3D - 6 92 IPR036638 GO:0046983
Vivi2g06973 218 Coils Coil 55 82 - -
Vivi2g06973 218 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Vivi2g06973 218 MobiDBLite consensus disorder prediction 1 28 - -
Vivi2g06973 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06973 Vivi-Chr2 211085336 211086351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06973 3 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.053 2.51e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g06973 HLH 8.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06973 - - mtr:25487667 277.33