Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06970 ATGGATCGCTATCAACAAGCCGGTCAACCTTCTTTTTCAACCAAAGTGGAAAGAAAGGTTGTTGAGAAAAATAGAAGAAATAAGATGAAGATTCTCTTTTCACACCTCAACTCTCTTTGCCCTAACTATAATTCCAAGGAAGCTTTACCATTACCTGATCAACTAGACGATGCTATAAACTACATTAAGAGTTTAGAGACAAATTTGAAGCTGGGGAAGGAGAAGAAAGAAAGATTAATGAGAAACAAGAGATCGCGTAGTGGCTGCTTGAATTCTTCTGGAGGAAATGGAAGCATAAAATCACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTGTAACATGTGGGGTTGATGAACAGTTTATTTTCTATGAAATTATAAGAATACTGCATGAAGAATACGTGGAGGTTATCTCTGCAAATTCTTCATTGGTTGGAGATTCGGTTATTCATGTTGTGCATGCAGAGAATCCACAATCTTTGTTTCAATTTGGAGCGACCAAAGTAGGCGAGAGATTGAAAAGGTATGTGAATGGATCTGTGGGAGAGGTGCAAATAGTACTGCCTCAATTATGGGATTTTGAAGTTGGAACTGAGAGTTGGGATCTAAATTCTATAGTAAACAAGTGTTTACGAAATTCTTAA 657 0.3653 MDRYQQAGQPSFSTKVERKVVEKNRRNKMKILFSHLNSLCPNYNSKEALPLPDQLDDAINYIKSLETNLKLGKEKKERLMRNKRSRSGCLNSSGGNGSIKSPKIEIHENGSSLQVIVTCGVDEQFIFYEIIRILHEEYVEVISANSSLVGDSVIHVVHAENPQSLFQFGATKVGERLKRYVNGSVGEVQIVLPQLWDFEVGTESWDLNSIVNKCLRNS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06970 218 Gene3D - 10 91 IPR036638 GO:0046983
Vivi2g06970 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 90 IPR036638 GO:0046983
Vivi2g06970 218 MobiDBLite consensus disorder prediction 80 102 - -
Vivi2g06970 218 SMART finulus 19 71 IPR011598 GO:0046983
Vivi2g06970 218 FunFam Transcription factor bHLH162 6 91 - -
Vivi2g06970 218 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 180 - -
Vivi2g06970 218 MobiDBLite consensus disorder prediction 85 102 - -
Vivi2g06970 218 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
Vivi2g06970 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Vivi2g06970 218 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06970 Vivi-Chr2 211000487 211001334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06970 13 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.556 1.66e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g06970 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06970 - - mtr:25487667 272.707