Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06967 ATGGGTTGTGTATATTCCAAGAAATCAGCTGTTGTTGGCAGCAAGGAAGGTTTAACAGCATCTAGCAAACGAAATGTTGGAAGGAATGTTGGCATGAATGTTTCAAGATTGGATATAAAGAAAAGGACGGATGAAGTTTTGAAGAAAGATGAGTTATTGGACGGTGTTTGTGCGGGAGTTTCGTTGAATGATGACAAGGAAGCTGATGGTTCGGCGCGGTTGTATGATGATAAGAATGAGAAGAAGAAGATGATGGAGAAAACTGAATTGGATTTGGCAGTTGTTGTTGATTATCCGAGTTTTGGAGGAAGGGTTCCAAAGGCTTTGGAAGGAGAGCAAGTTGCGGCGGGATGGCCAACTTGGCTTTCTTCTGTAGCTGGGGAAGCTATCCATGGATGGACACCGCGGAGTGCGAGTACTTTCGAGAAGTATGATAAAATTGGCCAGGGAACTTACAGCACTGTTTTTAAGGCGCGTGATTTGATTAGCCAAAAGACCGTTGCTTTGAAGCGGGTACGGTTTGATAATCTTGATCACGAGAGTGTCAAATTCATGGCAAGGGAAATTGTTTTTCTGCGTAGGCTTGACCATCCAAATATAATAAAATTGGAGGGCTTGATAACGTCACAGACGTCTCGTAGCATGTATCTTGTTTTTGAATACATGGAACATGATCTTACGGGACTCGCTACCGCACCTGGCATTAAGTTTTCAGAACCACAGGTTAAATGCTACATGAAGCAGCTTCTTAGAGGATTGGACCATTGCCATAGTCGTGGTGTCCTCCATCGTGATATAAAGGGCTCAAATCTTCTCATTGACAATAAAGGCATTTTAAAGATAGCAGATTTTGGTTTGGCAAATTTTTTTGACCCCGATCATAGTGCCCCATTGACCAGCCGCGTAGTAACTCTGTGGTATAGACCACCAGAGCTTTTACTCGGATCATCAAATTATGGAGTTGAAGTGGATATGTGGAGCACTGGTTGCATACTTGGTGAACTATACAATGGCAGACCTATATTGCCTGGAAAAACCGAGGTTGAGCAATTGCATAGAATTTTCAAACTTTGTGGATCACCATCTGTGGACTACTGGCATAAACTGCGGCTGCCACATTCTACAGTATTCAGGCCTCCACATCATTATAGGAACTGTGTAGCAGATACATTTAAAGAATTTCCATCTGCTGCTACGAGGCTTATAGAGACCCTTCTCTCTTTAGATCCTTTACTTCGAGGAACTGCAGCTACAGCTCTGAGTAACGAGTTCTTTTCATTGGAACCTGTTGCTTGCGATCCATCAGAATTGCCAAAATATCCTCCCAGCAAAGAGATTCACACTAAAATGCGGGAAGAATCAACAAGAAGGCACAAAGCTCTTGGGGAAAAGGAGCAAAAAGTTGGGCCACGAGTTAAACAAGAGAAAGAAACTCAGTCATTTGTCCTATCCAAAGCCAATGCTGATGCTCGCATTTCAACGAAGCATGAGCAGCGCTTTCCAAACATGGCAGGCCAGGATGGGCTGTTCAGCCGTCACAGAGAGTCTGTATCAGGATTACTGGTTTCCCCTCAGAAACAGTCAGAAGATATTAACGAAACAGTTAATTATTTCTCTGGGCCTCTTTATCAGAAGCCTTCAGATTCAGGTTTACTCGTTCCAGGTCTGGGCCGGCACAATATTGGAAAGGAAGCTGGTGAGCAACCACTTCCTCTTTCAAATAAAGTCAACCTATCAAAATATTCAAAACCATCTCCGACTTTGTTTTCTGGAAATCGAAAAGGAATTCCAGCTCCCTTGAGACCAAGAGATACAATTCAAGCACCGAAATCTTTAGGGTTGAGTAATGGGTCACCAGAGTCAAAAAGACTGAATGATAAAAAATGCCATTCTCAGAAAACCAATCTCAGCAAAACAGAAAATCGAAAGGACTGGCAGGCATCCAGCAAAAACAATCTCTATATGATTGGTTCATTGAAGTTTCCATCAAACAATATGCGTCAGGTGATCAAAGAGCGCGATCGGAAGACCCAAGAATACTCAAGATGA 2049 0.428 MGCVYSKKSAVVGSKEGLTASSKRNVGRNVGMNVSRLDIKKRTDEVLKKDELLDGVCAGVSLNDDKEADGSARLYDDKNEKKKMMEKTELDLAVVVDYPSFGGRVPKALEGEQVAAGWPTWLSSVAGEAIHGWTPRSASTFEKYDKIGQGTYSTVFKARDLISQKTVALKRVRFDNLDHESVKFMAREIVFLRRLDHPNIIKLEGLITSQTSRSMYLVFEYMEHDLTGLATAPGIKFSEPQVKCYMKQLLRGLDHCHSRGVLHRDIKGSNLLIDNKGILKIADFGLANFFDPDHSAPLTSRVVTLWYRPPELLLGSSNYGVEVDMWSTGCILGELYNGRPILPGKTEVEQLHRIFKLCGSPSVDYWHKLRLPHSTVFRPPHHYRNCVADTFKEFPSAATRLIETLLSLDPLLRGTAATALSNEFFSLEPVACDPSELPKYPPSKEIHTKMREESTRRHKALGEKEQKVGPRVKQEKETQSFVLSKANADARISTKHEQRFPNMAGQDGLFSRHRESVSGLLVSPQKQSEDINETVNYFSGPLYQKPSDSGLLVPGLGRHNIGKEAGEQPLPLSNKVNLSKYSKPSPTLFSGNRKGIPAPLRPRDTIQAPKSLGLSNGSPESKRLNDKKCHSQKTNLSKTENRKDWQASSKNNLYMIGSLKFPSNNMRQVIKERDRKTQEYSR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06967 682 SMART serkin_6 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06967 682 Gene3D Transferase(Phosphotransferase) domain 1 229 464 - -
Vivi2g06967 682 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Vivi2g06967 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Vivi2g06967 682 MobiDBLite consensus disorder prediction 448 478 - -
Vivi2g06967 682 FunFam probable serine/threonine-protein kinase At1g54610 128 223 - -
Vivi2g06967 682 PANTHER CELL DIVISION PROTEIN KINASE 139 431 - -
Vivi2g06967 682 MobiDBLite consensus disorder prediction 448 474 - -
Vivi2g06967 682 MobiDBLite consensus disorder prediction 549 646 - -
Vivi2g06967 682 CDD STKc_CDK9_like 141 425 - -
Vivi2g06967 682 FunFam probable serine/threonine-protein kinase At1g54610 224 465 - -
Vivi2g06967 682 Gene3D Phosphorylase Kinase; domain 1 135 228 - -
Vivi2g06967 682 Pfam Protein kinase domain 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06967 682 MobiDBLite consensus disorder prediction 621 645 - -
Vivi2g06967 682 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g06967 682 SUPERFAMILY Protein kinase-like (PK-like) 134 426 IPR011009 -
Vivi2g06967 682 MobiDBLite consensus disorder prediction 572 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06967 Vivi-Chr2 210931927 210935897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06967 133 476 Core Cell Cycle Gene Families AT5G10270 46.111 2.11e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi2g06967 Pkinase 4.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06967 - K08819 gmx:100781209 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06967 2 210931927 210935897 Vivi2g06967 2 210931927 210935897 ECH