Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06960 ATGACGGAGCCTCTTCTCAGAGGCGAAAGCAGTGGATTGAGAAACCGTTCGCGAGGGATAGTCCGCCGCACCGATGCTATCACCTACGGTTCCAACTATGAGAAAGCCGCCGCTCTCATCGATCTGGCTGAAGATGGTGTTGGTATACCTGAGCAACTTCTGGATTCATCAAACTTTCAAAGTTATTCAAGATTTTATTTTATGTTCACTAAATTCGATCTCATCTGGTCTCTTAGTTATTTTGCTCTGATAGTCCTGAATTTCCTGGAGAAACCTCTATGGTGTGAAAAGAATACCACGCATTCTTGCAATGATAGAGAGTATTTCTTTTTGGGACAGTTGCCATATCTAACTGCCGCACAATGTATTATTTATGAGGGAATAGTTCTTGTTTTGCTAATCATCCATACTTTCTGGCCTTTATCATACGAAGGGCCCCATATATATTGGAAAAGTCCTATTAATCTAGTGAAGGCCTTCTGTCTGTTAGTTATCCTTGCTGATATGCTGGTTTATGCTCTGTATATGTCTCCGGTGGGTTTGGATTTTCTTCCTTTCAGAATTGCACCTTATATCAGGGTTGTTCTTTTTGTTCTGAATATTAGGGAGCTACGAGAAACCACCATCGTCTTGGCTGGAATGTTTGACACATACTTAAATATCTTGGCTTTGGGGCTTCTTTTTCTTGTTTTTGCGAGTTGGGTGGCTTATGTGATTTTTGAAGATACAATGCAGGGGAAAACAGTATTCACTTCCTATACTACAACGTTATATCAGATGTTTCTGTTATTTACCACAGCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGGCTTCACGTTGGTCTTGCATTTTTTTCATTCTGTTTGTGCTGGTGGGAGTCTACTTTGTTACAAACTTGATCCTTGCCGTTGTTTATGACAGTTTCAAGAGTGAGCTTGTAAAACAAGTTTTTGATATGGATCATATGAGAAGAGCTATGTTGGAGAGAGCTTTTAATCTCCTAGATACACATAAAGTTGGATATCTCAACAAAGATCAAATCATTAGGCTCTTTGAGGAGGTGAACAAGTACAGGACTTTGCCAAAAATCTCCAAGGAAGAATTTGAGCTGATATTTGAGGAGTTGGATGACACTCATGATGTAAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCCATCGCCTTAAAATTCCAGAAGGAAGATGTGCTTTCTTACTTCGACTATTTAGTATTCTACCATTCACCAACGTCAAAGACATTGAAAGCTTTCGTAAGGAGCACCATGTTTGGATACATAGTGACCTTTGTACTCGTAGTGAATCTGGTTGCTGTAATTATTGAGACAACGCTTGACGTAGAAAATAGTTCTGCTCAAAAGGCTTGGCAAACGGCTGAGTTCTTTTTCGGGTGGATATATGTAATAGAAATGATTCTAAAGGTTTACTCATATGGATTTGAAAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTGATCACAGTGATAATTGTCATTGGAGAAACTATAGATTTTGCTTTTCCCGATGATGCTCTGCCATTTTTCACAAATGGAGAATGGATTCGTTACCTCCTTCTTGCAAGAATGTTGAGGTTGATAAGGCTCCTAATGCATGTCCAGCGATTCCGAAGTTTCGTGGCAACTTTCTTAACTCTGATACCAAGTTTGATGCCATACCTTGGGACCATATTTTGCATCTTGTGTATTTATTGCTCACTTGGCATCCAGATTTTTGGTGGTCTAGTTAATGCTGGAAACCCAGATTTGGAGGCCACAGACCTTGCTGCTAATGACTATTTACTTTTTAATTTCAATGATTATCCAAACGGAATGGTGACACTATTCAATTTGCTAGTCTTGGAGATATGGGAAGAATTGATGGAGAGCTACAAGGATTTAACTGGAACTTCGTGGACCTATGTGTACTTCATTAGCTTCTACTTAATTACGGTTTTGCTGCTTTTGAATTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATAGAGCTAGAGTCATCAGAAACTTGTGATGAAGATGACAAGGGAGTTGCAGGAGATAGATATCGGAGGCGACGAGCTCTTGGAACAAAAACACGAAGCCAGAGGGTTGATGCTCTTCTTCATCATATGCTAAGCGCTGAGCTGGGTCAAAATCATCCTTCCAATACATAA 2211 0.3957 MTEPLLRGESSGLRNRSRGIVRRTDAITYGSNYEKAAALIDLAEDGVGIPEQLLDSSNFQSYSRFYFMFTKFDLIWSLSYFALIVLNFLEKPLWCEKNTTHSCNDREYFFLGQLPYLTAAQCIIYEGIVLVLLIIHTFWPLSYEGPHIYWKSPINLVKAFCLLVILADMLVYALYMSPVGLDFLPFRIAPYIRVVLFVLNIRELRETTIVLAGMFDTYLNILALGLLFLVFASWVAYVIFEDTMQGKTVFTSYTTTLYQMFLLFTTANNPDVWVPAYKASRWSCIFFILFVLVGVYFVTNLILAVVYDSFKSELVKQVFDMDHMRRAMLERAFNLLDTHKVGYLNKDQIIRLFEEVNKYRTLPKISKEEFELIFEELDDTHDVKINKDEFADICNAIALKFQKEDVLSYFDYLVFYHSPTSKTLKAFVRSTMFGYIVTFVLVVNLVAVIIETTLDVENSSAQKAWQTAEFFFGWIYVIEMILKVYSYGFENYWRDGQNRFDFVITVIIVIGETIDFAFPDDALPFFTNGEWIRYLLLARMLRLIRLLMHVQRFRSFVATFLTLIPSLMPYLGTIFCILCIYCSLGIQIFGGLVNAGNPDLEATDLAANDYLLFNFNDYPNGMVTLFNLLVLEIWEELMESYKDLTGTSWTYVYFISFYLITVLLLLNLIIAFVLEAFFAEIELESSETCDEDDKGVAGDRYRRRRALGTKTRSQRVDALLHHMLSAELGQNHPSNT 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06960 736 FunFam Two pore calcium channel protein 1 557 715 - -
Vivi2g06960 736 FunFam Two pore calcium channel protein 1 423 556 - -
Vivi2g06960 736 Gene3D - 203 310 - -
Vivi2g06960 736 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 732 IPR044581 GO:0005245
Vivi2g06960 736 Pfam EF-hand domain pair 329 393 IPR002048 GO:0005509
Vivi2g06960 736 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Vivi2g06960 736 Gene3D - 557 713 - -
Vivi2g06960 736 Gene3D - 423 556 IPR027359 -
Vivi2g06960 736 SUPERFAMILY EF-hand 314 397 IPR011992 -
Vivi2g06960 736 Pfam Ion transport protein 431 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g06960 736 Pfam Ion transport protein 124 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi2g06960 736 SUPERFAMILY Voltage-gated potassium channels 431 677 - -
Vivi2g06960 736 Gene3D - 311 394 - -
Vivi2g06960 736 FunFam Two pore calcium channel protein 1 203 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06960 Vivi-Chr2 210828707 210845324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06960 1 736 Ion Channels AT4G03560 65.129 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06960 K16900 - gmx:100806160 1187.94