Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06958 ATGGTGGCGATAACAATGCAAAGCAAGAACACATACACAATCAGAGGCACCAAAAAGATCGTTAGAGCTGGAGACTGTGTTTCGCTACGCCCAACCGTAGCGAGCAAACCGATCATGGCTCGCATCGAGAAGATCGAGTCTGATAACATGAACCGCACAAGGGTTCATGTTAGATGGTACTATCGACCGGAAGAAGCGATCGGAGGACGCAAATCGTTTCATGGAGAGAAGGAGCTGTTTTTGTCTGATTATCATGATGTTCATAATGCTGACACCATTGAAGGGAAGGTTTTTGTGCACACTTTGAAGAGATACACTAAGCTTGCGACTGTTGGTGCTGAAGATTACTTTTGTAGGTTTCAGTACAAAGTTACTACCGGGACTTTTAAACCTCGTCGCGTCCCTGTGTTTTGTAAATGTGAAATGCCTTATAACCCAGATAGGTTTATGGCGGTGTGTGGGACATGCGACGAAAGGTACCATCCTGAGTGTGTGGGTATAACTCTTGGAAAAGCCATGAGATTGCAGGGGTTAGGATTTGCTTGTTCTGATTGTTATCCATCTGATTGTGATTTGAATTAG 582 0.4433 MVAITMQSKNTYTIRGTKKIVRAGDCVSLRPTVASKPIMARIEKIESDNMNRTRVHVRWYYRPEEAIGGRKSFHGEKELFLSDYHDVHNADTIEGKVFVHTLKRYTKLATVGAEDYFCRFQYKVTTGTFKPRRVPVFCKCEMPYNPDRFMAVCGTCDERYHPECVGITLGKAMRLQGLGFACSDCYPSDCDLN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06958 193 ProSiteProfiles BAH domain profile. 19 133 IPR001025 GO:0003682
Vivi2g06958 193 Pfam BAH domain 21 131 IPR001025 GO:0003682
Vivi2g06958 193 SMART BAH_4 19 133 IPR001025 GO:0003682
Vivi2g06958 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 191 IPR013083 -
Vivi2g06958 193 SMART PHD_3 137 186 IPR001965 -
Vivi2g06958 193 Gene3D - 5 129 IPR043151 -
Vivi2g06958 193 SUPERFAMILY FYVE/PHD zinc finger 131 188 IPR011011 -
Vivi2g06958 193 PANTHER OS08G0421900 PROTEIN 8 187 - -
Vivi2g06958 193 Pfam PHD-finger 137 187 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06958 Vivi-Chr2 210800499 210801757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06958 33 130 Core DNA Replication Machinery Family AT4G14700 31.683 4.11e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi2g06958 BAH 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06958 K25868 - gmx:100800993 243.047