Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06946 ATGGCCTTAAATGAGTATTTTGCTGAGGGTGCGAACCAAATTGATTCATTGGAAGATAAATCATCTCAGGGAATGTGGAAATGCTCCGGTGCTGAAGCGATTTCAGGTTCGAGTGGCTTTGACTGCAACATATGTCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTCTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTGAATGTCCATGGCCAATCTCAAGAGAAGCAGAAGGAAAAGCCGCAGTGTCCAGTATGCAAATCAGAAATTTCAAAATCATCACTTGTTCCGCTCTACGGTCGCGGCCAAACCACACCGCCTTCCGAAGACAATGCTCAGCAAGTAAGGAGTGTCATACCACCGAGACCGCCCAGTCCTTCATGGATGACTAACTTACCAAGATCACTTGATGCTGCAACTGTTTCACAACACACTTCTCAGGTTTATCATCCTCATTATCATAATCATACTCAACGATACACGTCACCAATGCTTAACACGGGTGGTTCACTGACCAATCCATTGGATACAAGCTATGGTGTCTTTGGTGAGATGATATATGCTAGGATCTTTGGAAACCAAGTGACAGACGTTTATACATACCCGAATTCTTACAATCTTTCGGGGATCAGTAATCCTAGGATCAGAAGACATTTGAGGCGAGCTGATAAGTCACTCGGTAGAATCTGTTTCTTCCTCCTTTGTTGCACAATATTGTTTCTTCTCTTATTTTGA 744 0.4422 MALNEYFAEGANQIDSLEDKSSQGMWKCSGAEAISGSSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNVHGQSQEKQKEKPQCPVCKSEISKSSLVPLYGRGQTTPPSEDNAQQVRSVIPPRPPSPSWMTNLPRSLDAATVSQHTSQVYHPHYHNHTQRYTSPMLNTGGSLTNPLDTSYGVFGEMIYARIFGNQVTDVYTYPNSYNLSGISNPRIRRHLRRADKSLGRICFFLLCCTILFLLLF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06946 247 MobiDBLite consensus disorder prediction 100 118 - -
Vivi2g06946 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 118 IPR013083 -
Vivi2g06946 247 Pfam RING-type zinc-finger 42 87 IPR027370 -
Vivi2g06946 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 244 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g06946 247 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Vivi2g06946 247 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Vivi2g06946 247 SUPERFAMILY RING/U-box 38 102 - -
Vivi2g06946 247 SMART ring_2 42 89 IPR001841 -
Vivi2g06946 247 MobiDBLite consensus disorder prediction 100 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06946 Vivi-Chr2 209903517 209905913 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06946 34 247 C3H Transcription Factor Family AT4G28270 37.273 1.76e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06946 K10666 - gmx:100785491 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06946 2 209903517 209905913 Vivi2g06946 2 209903517 209905913 ECH