Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06942 ATGAAGCACCACCACCGTGTCTCCTCCGCCTTGGTTCTTTTAAGCCTATGCTTCATCCTTGTGCAAGGAAAGTCTAAGCAAAGTAGTGTCCACATTGACACACATTGGCACCCGGGAACCGCTACCTGGTACGGAGGGGCTGAGGGAGACGGTAGCACAGGAGGTGCGTGTGGGTACGGTAATTTGGTGGACGTGAAGCCGTTAAGGGCAAGAGTAGGGGCAGTGGGGCCAGTGCTGTATAAGAAGGGAGAAGGGTGCGGAGAGTGTTATAAGGTCAAGTGTTTGGACCATACAATATGTTCAAAGCGGGCAGTGACGGTTATAATAACAGATGAGTGCCCTGGCTGCCCGTCTGATCGAACACACTTCGACCTCAGTGGGGCTGCTTTTGGTCACATGGCTCTTCCTGGTGAGAATGGTCAGCTCAGAAATAGAGGTGAAATTCCAGTGGTTTACAGAAGAACAACGTGCGTATACACTGGCAAAAATATTGCCTTCCAAGTGAATGAAGGCTCCACACCATTTTGGTTGTCACTTCTAGTGGAGTTTGAAGATGGAGATGGGGACATAGGCTCCATGCTTATACAAGAAGCTGGGTCTAGTGAGTGGCTGCAAATGAAACATCTATGGGGTGCAAATTGGTGCATTACTGCTGGACCTTTGAAAGGACCTTTTTCTGTTAAACTAACCACTTCCAGTGGGAGAAGCCTCACTGCTAAGGATGTTATTCCAACTAATTGGTCTCCCAAATCCACTTATACTTCTCGCTTAAATTTCTCTCCTTAA 786 0.4809 MKHHHRVSSALVLLSLCFILVQGKSKQSSVHIDTHWHPGTATWYGGAEGDGSTGGACGYGNLVDVKPLRARVGAVGPVLYKKGEGCGECYKVKCLDHTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMALPGENGQLRNRGEIPVVYRRTTCVYTGKNIAFQVNEGSTPFWLSLLVEFEDGDGDIGSMLIQEAGSSEWLQMKHLWGANWCITAGPLKGPFSVKLTTSSGRSLTAKDVIPTNWSPKSTYTSRLNFSP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06942 261 CDD DPBB_EXPB_N 36 157 - -
Vivi2g06942 261 SMART dpbb_1 72 152 IPR007112 -
Vivi2g06942 261 Pfam Lytic transglycolase 77 152 IPR009009 -
Vivi2g06942 261 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Vivi2g06942 261 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Vivi2g06942 261 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Vivi2g06942 261 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vivi2g06942 261 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Vivi2g06942 261 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Vivi2g06942 261 Gene3D - 21 157 IPR036908 -
Vivi2g06942 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Vivi2g06942 261 SUPERFAMILY Barwin-like endoglucanases 32 161 IPR036908 -
Vivi2g06942 261 Gene3D - 159 260 IPR036749 -
Vivi2g06942 261 Pfam Expansin C-terminal domain 164 244 IPR007117 -
Vivi2g06942 261 PRINTS Major pollen allergen Lol pI signature 112 127 IPR005795 GO:0005576|GO:0019953
Vivi2g06942 261 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Vivi2g06942 261 PRINTS Major pollen allergen Lol pI signature 231 248 IPR005795 GO:0005576|GO:0019953
Vivi2g06942 261 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Vivi2g06942 261 PRINTS Major pollen allergen Lol pI signature 134 149 IPR005795 GO:0005576|GO:0019953
Vivi2g06942 261 PRINTS Major pollen allergen Lol pI signature 211 228 IPR005795 GO:0005576|GO:0019953
Vivi2g06942 261 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Vivi2g06942 261 PANTHER EXPANSIN-B3 14 259 - -
Vivi2g06942 261 FunFam Expansin B3 22 158 - -
Vivi2g06942 261 FunFam Beta-expansin 3 159 260 - -
Vivi2g06942 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 162 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06942 Vivi-Chr2 209853634 209855835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06942 11 197 Expansin Gene Family AT4G28250 66.146 1.25e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06942 K20628 - gmx:100780112 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06942 2 209853634 209855835 Vivi2g06942 2 209853634 209855835 ECH
Vivi2g06942 2 209853634 209855835 Vivi5g03362 5 124816839 124820989 PCT