Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06938 ATGGCCAAGAACAGTGGAAAATTCAACAGGGATTTCGGTGATGAAACTCAGAATTACAACAAGTTTACACAAATGGGTGAAAGCCAGGTTAATTGGGAGAATGAAAAAGGAAAAAGTGTTGAATTAAGCGCTTCTCAAAAGCATCACTGGAAGCCCGTTTTTGATGAAGCTTCCGTTTCACATAATAGACCTTTCAAGAAAAGCAAAAGCCCTGAACGTGAAAGTCATAATCAAAATCAAAATCAGTTTTCACCTTTCTCTCTTCCTTCTTCAGCTTCTTCTTCTTCTTCAAGGCTTGTTTTTCCCTTTGCTTTTGATAATAATAACTCTCAGTCTCACCAATTTGGAACCAACAACAATTTACCTTTTCACCCTCCAACACCTCAACCTATTCACACAACACAAATCCAACAACAGCACCAACAGATGATATCTTTTGAGTCACAATCACAATCACAAACACAACATCAGAACAATATTGTTTCGTATCCGCCACCGATTTTGTCTCAACAGCATCATCAACAGCTTCTTCACTATTGGAGTGATGCATTGAATCTTAGTCCAAGAGGAAGAATGTTGATGATGATGAACAACAATAACAATAGGTACTTGGGAGGGCAATATGGTAATAGTGCTAGTGGAGCAATGTTTAGGCCTCAAGTTCAACCTATAAGCACAACAAAACTCTATAGAGGAGTTAGACAACGCCATTGGGGAAAATGGGTTGCTGAAATTCGTCTACCGCGTAATCGAACTCGTCTTTGGTTAGGCACATTTGATACTGCAGAAGATGCTGCTTTAGCCTATGATCGCGAAGCATTCAAGTTACGAGGAGAGAATGCACGGCTCAATTTTCCCGAACTTTTTCTCAACAAAGATAAAGATAAAGAAAAAGAAAAAGAAAAAGAAGAAGAAGCACAAGAAGAAGAAGAAGCGCATTCATCGCCACCTCCAACAACATCAACAACAACAGATTCATCTGTTTCTTGTCCTTCAAGTAACACCGTTACAAAGCAGCCTGAACCTCCGTCAATGCAGACACTTCAAATGGAAGAGTCTAATGAGAATGACTCCGGAATTGGATCGAGTGACGCGAGTCACGCGACAGTGAGCGAAGGGGTAGAAGGAGTTTCAGTTTCACAGTCACAGGAACTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATCCCAGCTGGTTGGGGACCAGGTAGTCCTGTTTGGGATGATTTGGATACAAACAACAATCTTAATCTTTTTTCGCAATCACAAATTCCATTTTCCAATCTCAACCAACAATCAGAATTCAATGATTTTGATCCACAGATGGGGTCAAGTTCTTTCATTAGGCCTTTCTACTGGAACAATGATCAGAATTAA 1380 0.4007 MAKNSGKFNRDFGDETQNYNKFTQMGESQVNWENEKGKSVELSASQKHHWKPVFDEASVSHNRPFKKSKSPERESHNQNQNQFSPFSLPSSASSSSSRLVFPFAFDNNNSQSHQFGTNNNLPFHPPTPQPIHTTQIQQQHQQMISFESQSQSQTQHQNNIVSYPPPILSQQHHQQLLHYWSDALNLSPRGRMLMMMNNNNNRYLGGQYGNSASGAMFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKEKEKEKEEEAQEEEEAHSSPPPTTSTTTDSSVSCPSSNTVTKQPEPPSMQTLQMEESNENDSGIGSSDASHATVSEGVEGVSVSQSQELVWSEMSAWFNAIPAGWGPGSPVWDDLDTNNNLNLFSQSQIPFSNLNQQSEFNDFDPQMGSSSFIRPFYWNNDQN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06938 459 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 31 411 - -
Vivi2g06938 459 MobiDBLite consensus disorder prediction 75 90 - -
Vivi2g06938 459 MobiDBLite consensus disorder prediction 292 312 - -
Vivi2g06938 459 MobiDBLite consensus disorder prediction 292 376 - -
Vivi2g06938 459 SUPERFAMILY DNA-binding domain 229 287 IPR016177 GO:0003677
Vivi2g06938 459 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Vivi2g06938 459 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Vivi2g06938 459 MobiDBLite consensus disorder prediction 110 131 - -
Vivi2g06938 459 FunFam Ethylene-responsive transcription factor 2 228 287 - -
Vivi2g06938 459 Coils Coil 289 312 - -
Vivi2g06938 459 MobiDBLite consensus disorder prediction 1 90 - -
Vivi2g06938 459 MobiDBLite consensus disorder prediction 40 74 - -
Vivi2g06938 459 Pfam AP2 domain 230 278 IPR001471 GO:0003700|GO:0006355
Vivi2g06938 459 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Vivi2g06938 459 MobiDBLite consensus disorder prediction 313 376 - -
Vivi2g06938 459 MobiDBLite consensus disorder prediction 11 39 - -
Vivi2g06938 459 Gene3D AP2/ERF domain 229 287 IPR036955 GO:0003700|GO:0006355
Vivi2g06938 459 PRINTS Ethylene responsive element binding protein signature 252 268 IPR001471 GO:0003700|GO:0006355
Vivi2g06938 459 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06938 Vivi-Chr2 209808462 209810664 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06938 2 410 AP2-EREBP Transcription Factor Family AT2G20880 38.142 1.24e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g06938 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06938 - - vvo:131648120 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06938 2 209808462 209810664 Vivi2g06938 2 209808462 209810664 ECH