Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06929 ATGGCCAAGAACAGTGGAAAGTTCAACAGGGATTTCGGTGATGAAACTCCCAACCACAACAAGTTTACACAAATGGGTGAAAGCCATGTTAATTGGGAGAATGAAAAAGGAAAAAGTGTTGAATTAAGCGCTTCTCAAAAGCATCACTGGAAGCCCGTTTTTGATGAAGCTTCCGTTTCACATAATAGACCTTTCAAGAAAAGCAAAAGCCCTGAACGTGAAAGTCATAATCAAAATCAAAATCAGTTTTCACCTTTCTCTCTTCCTTCTTCAGCTTCTTCTTCTTCAAGACTTGTTTTTCCCTTTGCTTTTGATAATAATAACTCTCAGTCTCACCAATTTGGAACCAACAACAATTTACCTTTTCACCCTCCACCACCTCAACCTATTCAAACAACACAAATCCAACAACAGCAGCAACAAATGATATCTTTTGGGTCACAAACACAACAACAGAACAATATTGTTTCGTATCCGCCACCGATTTTGTCGCAACAGCATCATCAACAGCTTCTTCACTATTGGAGTGATGCATTGAATCTTAGTCCAAGAGGAAGAATGTTGATGATGATGAACAACAATAACAATAGGTACTTGGGAGGGCAATATGGTAATAGTACTAATGGAGCAATGTTTAGGCCTCAAGTTCAACCTATAAGCACAACAAAACTCTATAGAGGAGTTAGACAACGCCATTGGGGAAAATGGGTTGCTGAAATTCGTCTACCGCGTAATCGAACTCGTCTTTGGTTAGGCACATTTGATACTGCAGAAGATGCTGCTTTAGCCTATGATCGCGAAGCATTCAAGTTAAGAGGAGAGAATGCACGGCTCAATTTTCCCGAACTTTTTCTCAACAAAGATAAAGATAAAGAAAAAGAAAAGGAAGAAGAAACGCAAGAAGAAGAAGCGCATTCATCGCCACCTCCAACAACATCAACAACAACAGATTCATCGGTTTCTTGTCCTTCAAGTAACACCGTTACAAAGCAGGCTGAACCTCCGTCAATGCAGACACTTCAAATGGAAGAGTCTAATGAGAATGACTCCGGAATTGGATCAAGTGACGCGAGTCACGCGACAGTGAGCGAAGGCGTAGAAGGGGTTTCAGTTTCACAGTCACAGGAACTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATCCCAGCTGGTTGGGGACCAGGCAGTCCTGTTTGGGATGATTTGGATACAAACAACAATCTTAATCTTTTTTCGCAGTCACAAATTCCGTTTTCCAATCTCAACCAACAATCAGAGTTCAATGATTTTGATCCACAGATGGGGTCAAGTTCTTTCATCAGGCCTTTCTACTGGAACAATGATCAGAATTAA 1356 0.4078 MAKNSGKFNRDFGDETPNHNKFTQMGESHVNWENEKGKSVELSASQKHHWKPVFDEASVSHNRPFKKSKSPERESHNQNQNQFSPFSLPSSASSSSRLVFPFAFDNNNSQSHQFGTNNNLPFHPPPPQPIQTTQIQQQQQQMISFGSQTQQQNNIVSYPPPILSQQHHQQLLHYWSDALNLSPRGRMLMMMNNNNNRYLGGQYGNSTNGAMFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKDKEKEKEEETQEEEAHSSPPPTTSTTTDSSVSCPSSNTVTKQAEPPSMQTLQMEESNENDSGIGSSDASHATVSEGVEGVSVSQSQELVWSEMSAWFNAIPAGWGPGSPVWDDLDTNNNLNLFSQSQIPFSNLNQQSEFNDFDPQMGSSSFIRPFYWNNDQN 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06929 451 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 34 403 - -
Vivi2g06929 451 MobiDBLite consensus disorder prediction 75 90 - -
Vivi2g06929 451 Pfam AP2 domain 225 273 IPR001471 GO:0003700|GO:0006355
Vivi2g06929 451 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Vivi2g06929 451 PRINTS Ethylene responsive element binding protein signature 247 263 IPR001471 GO:0003700|GO:0006355
Vivi2g06929 451 MobiDBLite consensus disorder prediction 287 368 - -
Vivi2g06929 451 MobiDBLite consensus disorder prediction 287 304 - -
Vivi2g06929 451 SMART rav1_2 224 287 IPR001471 GO:0003700|GO:0006355
Vivi2g06929 451 CDD AP2 223 283 IPR001471 GO:0003700|GO:0006355
Vivi2g06929 451 FunFam Ethylene-responsive transcription factor 2 223 282 - -
Vivi2g06929 451 SUPERFAMILY DNA-binding domain 224 282 IPR016177 GO:0003677
Vivi2g06929 451 MobiDBLite consensus disorder prediction 1 90 - -
Vivi2g06929 451 ProSiteProfiles AP2/ERF domain profile. 224 281 IPR001471 GO:0003700|GO:0006355
Vivi2g06929 451 MobiDBLite consensus disorder prediction 305 368 - -
Vivi2g06929 451 Gene3D AP2/ERF domain 224 282 IPR036955 GO:0003700|GO:0006355
Vivi2g06929 451 MobiDBLite consensus disorder prediction 31 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06929 Vivi-Chr2 209623762 209625895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06929 119 402 AP2-EREBP Transcription Factor Family AT2G20880 42.612 6.32e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g06929 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06929 - - vvo:131648120 733.406