Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06909 ATGGTAGTAATCGAGCATCAGGAGACTGATGATCGAAACCCTAATCCCTCCATCGCCGGCACAAGTAACGACCCTTCCGACGGCTTTGAAACCGCCAGTGACACCGATCTCGGCAGCGACGTCGATGCCAATGACGGCGGTGCAATCAAACACGAAGAACGGGAACATCTTCAGACACAAAACCAACATACTGAGCAAGAGCAGGAGAAGGAGCAGGGTGATCCTCAGAGAATCATTTCCTCTGACGATGCTTCGATCAACGAGGAGGAACTGAAACAGAAAGCATTGATTCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAACTTTTTGTAGATGCTAAGTATGAGGAGGCATTAACACAATATGAACTAGCTTTACAAGTTGCGCCGGACATGCCTTCATCGGTAGAAATACGATCGATATGCCATGCTAACCGTGGTGTGTGCTTTCTGAAAATGGGGAAATATGACAACACTGTTAAAGAATGCACCAAAGCATTAGAATTGAATCCTACCTATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAACTTGAGCATTTTGAAGAGGCTATCGCGGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCTAGCTGGGAAAGCCATTCGCCGGCTAGAGCCCCTTGCTGCAGTAAAACGGGAAAAGATGAAAGAAGAAATGATTGCAAAACTGAAAGATATGGGCAACTCTCTCTTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTGTCTCATTCAACCAGTAA 816 0.4498 MVVIEHQETDDRNPNPSIAGTSNDPSDGFETASDTDLGSDVDANDGGAIKHEEREHLQTQNQHTEQEQEKEQGDPQRIISSDDASINEEELKQKALIQANEAKVEGNKLFVDAKYEEALTQYELALQVAPDMPSSVEIRSICHANRGVCFLKMGKYDNTVKECTKALELNPTYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDLAGKAIRRLEPLAAVKREKMKEEMIAKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSVSFNQ 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06909 271 Coils Coil 49 74 - -
Vivi2g06909 271 MobiDBLite consensus disorder prediction 13 33 - -
Vivi2g06909 271 Pfam Tetratricopeptide repeat 175 207 IPR013105 -
Vivi2g06909 271 SMART tpr_5 140 173 IPR019734 GO:0005515
Vivi2g06909 271 SMART tpr_5 174 207 IPR019734 GO:0005515
Vivi2g06909 271 SMART tpr_5 99 132 IPR019734 GO:0005515
Vivi2g06909 271 MobiDBLite consensus disorder prediction 45 77 - -
Vivi2g06909 271 Pfam Tetratricopeptide repeat 142 173 IPR001440 GO:0005515
Vivi2g06909 271 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 40 271 - -
Vivi2g06909 271 Gene3D Tetratricopeptide repeat domain 49 238 IPR011990 GO:0005515
Vivi2g06909 271 SUPERFAMILY TPR-like 99 211 IPR011990 GO:0005515
Vivi2g06909 271 MobiDBLite consensus disorder prediction 1 77 - -
Vivi2g06909 271 ProSiteProfiles TPR repeat profile. 174 207 IPR019734 GO:0005515
Vivi2g06909 271 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06909 Vivi-Chr2 209342976 209346702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06909 99 241 Calmodulin-binding Proteins AT3G25230 37.748 6.25e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06909 K24926 - gmx:100808386 382.104