Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06877 ATGGGAAGATCACCTTGTTGTGAGAAAACTGGACTCAAGAAAGGTCCATGGACACATGAAGAAGATCTTTTGCTTATCAATTATATTAATTCTCATGGAGCTGGAAATTGGCGTAACCTCCCCAAAAATGCTGGTCTTCAAAGATGTGGAAAAAGTTGTCGGCTTCGTTGGACTAATTATTTGAGACCTGATATCAAAAGAGGAAGATTCTCGTTCGAAGAAGAAGAAGCCATCATTCAACTCCATAGTGTCATGGGAAACAAATGGTCGGCTATAGCAGCAAGACTACCGGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACGCACATTAGAAAAAGACTACTTCGAAGTGGAATCGACCCGGTGACTCATACTCCGCGTCTTGATCGTCTATTCGACATGTCCTCCATTAATATTCTCAGATCAGCTTTACTAGGATCCAACCCTTCATTTCTGAATCTATTAGGTGGTGCTCAAGCTATGATGAATCCAGAATTGTTAAAACTAGCTGCAACTGCCACACTATTAAACAACAACAACAGCAACAACAACATGAATTTGGTTTCACAGAATCAGCAACAGTTCAATAATGTTGCTAATTATTCTACTCAACAACAAGTACAAAATAATCAAGTTTCTTTACAAGATCAGTTTCAAATACCAACTCAAACTCACAACAATATTATGAGTAGTTCAAATTCAGCTGAAACTTCAAATCCTTGTTATTTTGGAGAAGATTTGATTTCTAAACAATATTCAGAACTGTTTCATTGTCTTAACAATGGAAACAATGAAAATATGGGATACGAATCGGTAATATCTTCTACGCCTTTATCGACTACGCCTTTATCGACGACACCGACACCGACACCAACACCATCATCAACTTATGTGAATAGCTGCACAGAGGAAGAGAGGGATACATATTGCAGTGACATATTCAAGTTTGAAATTCCACAGGGTAGTTTGGATATTAATGATTTCTTGTAA 996 0.3755 MGRSPCCEKTGLKKGPWTHEEDLLLINYINSHGAGNWRNLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEAIIQLHSVMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRSGIDPVTHTPRLDRLFDMSSINILRSALLGSNPSFLNLLGGAQAMMNPELLKLAATATLLNNNNSNNNMNLVSQNQQQFNNVANYSTQQQVQNNQVSLQDQFQIPTQTHNNIMSSSNSAETSNPCYFGEDLISKQYSELFHCLNNGNNENMGYESVISSTPLSTTPLSTTPTPTPTPSSTYVNSCTEEERDTYCSDIFKFEIPQGSLDINDFL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06877 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g06877 331 CDD SANT 69 112 IPR001005 -
Vivi2g06877 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 240 - -
Vivi2g06877 331 CDD SANT 16 61 IPR001005 -
Vivi2g06877 331 SMART sant 66 114 IPR001005 -
Vivi2g06877 331 SMART sant 13 63 IPR001005 -
Vivi2g06877 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g06877 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g06877 331 MobiDBLite consensus disorder prediction 277 301 - -
Vivi2g06877 331 FunFam Transcription factor MYB39 69 130 - -
Vivi2g06877 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g06877 331 Gene3D - 69 116 - -
Vivi2g06877 331 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi2g06877 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g06877 331 Gene3D - 13 66 - -
Vivi2g06877 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g06877 331 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06877 Vivi-Chr2 208597278 208598798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06877 1 331 MYB Transcription Factor Family AT4G21440 45.867 4.51e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g06877 Myb_DNA-binding 5.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06877 K09422 - gmx:102668351 382.489