Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g06868 ATGGGGAGAAGCCCTTGTTGTGACAAAACTGGATTGAGAAAAGGTGCGTGGACTCCTGAGGAAGACAACAAGTTAATCGCTTATGTAACTAGATATGGATCTTGGAATTGGCGACAACTACCTAAATTTGCAGGTCTTAAAAGGTGTGGGAAGAGTTGTAGGCTAAGGTGGTTGAACTATCTAAGACCAGATATCAAAAGAGGAAACTTTACTCAACAAGAAGAAGATACTATTATCAAACTTCATCAAAAACTGGGTAATAGATGGATTGTGATTGCTGCAAATTTACCTGGAAGAACAGATAACGAGATAAAGAATCATTGGCACACAAACTTGAAAAAGCGTTTTATAAAAAATAAAAAGTCGGACACTAATAATAGAGCAGGAAACTCCAAAGAAACAAGTTCAGATAACCCTACAATGGAAGAAGACAATAAACATGAAGGAGTGTTTGAGAATAGTTGTGGTGGTCCCAATTCTACAAGTCCATCATCTTCAATCCCATCTTCAAGTGGAACAATGGATACTCCAACAACTACGGAAATATCATATGAAAATCATCTTCTTGATGAGCTTCCTCTATTGGATGCATACATGGATGTTTTGAATGATAATTTCTGGACAGAACCTTATATGATAGACAATTCATATGTCCCTCCAACAGAAGATGCTACATTATTACCTGTCTGGTGTGAACAAGGATACTTCGGTTCTATGTACGATGAACAACTTTGGAGCCATGGAGAATAA 750 0.3733 MGRSPCCDKTGLRKGAWTPEEDNKLIAYVTRYGSWNWRQLPKFAGLKRCGKSCRLRWLNYLRPDIKRGNFTQQEEDTIIKLHQKLGNRWIVIAANLPGRTDNEIKNHWHTNLKKRFIKNKKSDTNNRAGNSKETSSDNPTMEEDNKHEGVFENSCGGPNSTSPSSSIPSSSGTMDTPTTTEISYENHLLDELPLLDAYMDVLNDNFWTEPYMIDNSYVPPTEDATLLPVWCEQGYFGSMYDEQLWSHGE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g06868 249 CDD SANT 69 112 IPR001005 -
Vivi2g06868 249 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 183 - -
Vivi2g06868 249 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi2g06868 249 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi2g06868 249 FunFam MYB-related transcription factor 13 66 - -
Vivi2g06868 249 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi2g06868 249 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi2g06868 249 CDD SANT 16 61 IPR001005 -
Vivi2g06868 249 Gene3D - 68 146 - -
Vivi2g06868 249 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi2g06868 249 MobiDBLite consensus disorder prediction 115 179 - -
Vivi2g06868 249 SMART sant 66 114 IPR001005 -
Vivi2g06868 249 SMART sant 13 63 IPR001005 -
Vivi2g06868 249 MobiDBLite consensus disorder prediction 154 179 - -
Vivi2g06868 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi2g06868 249 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi2g06868 249 Gene3D - 7 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g06868 Vivi-Chr2 208375791 208377059 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g06868 1 216 MYB Transcription Factor Family AT2G31180 50.926 7.03e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g06868 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g06868 K09422 - mtr:11411430 272.707